Evidence map›Paper›PMID 31506065›Full record

ArticleBMC genomics2019

The effect of age on DNA methylation in whole blood among Bangladeshi men and women.

Rick J Jansen, Lin Tong, Maria Argos, Farzana Jasmine, Muhammad Rakibuz-Zaman, Golam Sarwar, Md Tariqul Islam, Hasan Shahriar, Tariqul Islam, Mahfuzar Rahman and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Rick J JansenDepartment of Public Health, North Dakota State University, Fargo, ND, USA.
Lin TongDepartment of Public Health Sciences, University of Chicago, 5841 S. Maryland Ave., W264, MC2000, Chicago, IL, 60637, USA.
Maria ArgosDivison of Epidemiology and Biostatistics, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA.
Farzana JasmineDepartment of Public Health Sciences, University of Chicago, 5841 S. Maryland Ave., W264, MC2000, Chicago, IL, 60637, USA.
Muhammad Rakibuz-ZamanUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Golam SarwarUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Md Tariqul IslamUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Hasan ShahriarUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Tariqul IslamUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Mahfuzar RahmanUChicago Research Bangladesh Mohakhali, Dhaka, 1230, Bangladesh.
Md YunusInternational Centre for Diarrhoeal Disease Research Bangladesh, Dhaka, 1000, Bangladesh.
Muhammad G KibriyaDepartment of Public Health Sciences, University of Chicago, 5841 S. Maryland Ave., W264, MC2000, Chicago, IL, 60637, USA.
John A BaronDepartment of Epidemiology, Gillings School of Global Public Health, University of North Caroline, Chapel Hill, NC, USA.
Habibul AhsanDepartment of Public Health Sciences, University of Chicago, 5841 S. Maryland Ave., W264, MC2000, Chicago, IL, 60637, USA. habib@uchicago.edu.
Brandon L PierceDepartment of Public Health Sciences, University of Chicago, 5841 S. Maryland Ave., W264, MC2000, Chicago, IL, 60637, USA. brandonpierce@uchicago.edu.ORCID http://orcid.org/0000-0002-7829-952X
Chicago Department of Public Health · USUniversity of Chicago Research Bangladesh · BDBRAC · BDInternational Centre for Diarrhoeal Disease Research · BDNorth Dakota State University · USUniversity of Illinois Chicago · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
Targeting CLEC-2/podoplanin as a therapeutic strategy for pancreatic cancerP20GM109024 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI Sanku Mallik · 2016 to 2026
$20.5M
Chemoprevention of arsenic-induced skin cancerR01CA107431 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2005 to 2014
$17.3M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
Arsenic and the Human Genome: susceptibility and response to exposure Supplement 4R35ES028379 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2017 to 2024
$5.6M
A Study of Telomeres in an Arsenic-Exposed Bangladesh CohortR01ES020506 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2011 to 2015
$1.9M
Enhancement and Maintenance of the HEALS cohortR24ES028532 · NIEHS · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2017 to 2022
$1.7M
National Institute for Environmental Health Sciences R35ES028379NCI NIH HHS P30 CA014599NCI NIH HHS P30CA014599NCI NIH HHS R01CA107431NIEHS NIH HHS R01 ES020506NIEHS NIH HHS R01ES020506NIEHS NIH HHS R35 ES028379NIGMS NIH HHS P20 GM109024NIGMS NIH HHS P20GM109024
6 · The paper itself

Abstract

backgroundIt is well-known that methylation changes occur as humans age, however, understanding how age-related changes in DNA methylation vary by sex is lacking. In this study, we characterize the effect of age on DNA methylation in a sex-specific manner and determine if these effects vary by genomic context. We used the Illumina HumanMethylation 450 K array and DNA derived from whole blood for 400 adult participants (189 males and 211 females) from Bangladesh to identify age-associated CpG sites and regions and characterize the location of these age-associated sites with respect to CpG islands (vs. shore, shelf, or open sea) and gene regions (vs. intergenic). We conducted a genome-wide search for age-associated CpG sites (among 423,604 sites) using a reference-free approach to adjust for cell type composition (the R package RefFreeEWAS) and performed an independent replication analysis of age-associated CpGs.

resultsThe number of age-associated CpGs (p < 5 x 10

conclusionsOur results describe genome-wide features of age-related changes in DNA methylation. The observed associations between age and methylation were generally consistent for both sexes, although the associations tended to be stronger among women. Our population may have unique age-related methylation changes that are not captured in the established methylation-based age prediction model we used, which was developed to be non-tissue-specific.

Indexed as

DNA MethylationAdultAgedAgingBangladeshBloodCpG IslandsEpigenesis, GeneticFemaleGenetic Predisposition to DiseaseGenome, HumanHumansMaleMiddle AgedSex CharacteristicsAge-associatedAge prediction modelCell type adjustmentGenome-wideMethylationRefFreeEWASSex-specific

Identifiers

PMID31506065
PMCPMC6734473
OpenAlexW2972655638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.