Evidence map›Paper›PMID 31506003›Full record

ArticleEpigenetics2020

Age-related DNA hydroxymethylation is enriched for gene expression and immune system processes in human peripheral blood.

Nicholas D Johnson, Luoxiu Huang, Ronghua Li, Yun Li, Yuchen Yang, Hye Rim Kim, Crystal Grant, Hao Wu, Eric A Whitsel, Douglas P Kiel and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Nicholas D JohnsonDepartment of Human Genetics, Emory University, Atlanta, GA, USA.
Luoxiu HuangDepartment of Human Genetics, Emory University, Atlanta, GA, USA.
Ronghua LiDepartment of Human Genetics, Emory University, Atlanta, GA, USA.
Yun LiDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.ORCID 0000-0002-9275-4189
Yuchen YangDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Hye Rim KimDepartment of Human Genetics, Emory University, Atlanta, GA, USA.ORCID 0000-0002-6879-2644
Crystal GrantDepartment of Human Genetics, Emory University, Atlanta, GA, USA.ORCID 0000-0002-5623-7002
Hao WuDepartment of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA.
Eric A WhitselDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, USA.ORCID 0000-0003-4843-3641
Douglas P KielHebrew SeniorLife, Department of Medicine Beth Israel Deaconess Medical Center and Harvard Medical School, Hinda and Arthur Marcus Institute for Aging Research, Boston, MA, USA.ORCID 0000-0001-8474-0310
Andrea A BaccarelliDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Peng JinDepartment of Human Genetics, Emory University, Atlanta, GA, USA.ORCID 0000-0001-6137-6659
Joanne M MurabitoNational Heart Lung and Blood Institute's and Boston University's Framingham Heart Study, Framingham, MA, USA.
Karen N ConneelyDepartment of Human Genetics, Emory University, Atlanta, GA, USA.
Emory University · USUniversity of North Carolina at Chapel Hill · USBeth Israel Deaconess Medical Center · USBoston University · USColumbia University · US

Funding

Identifying epigenetic mechanisms underlying age-related disease risk in CHARGEU34AG051418 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BACCARELLI, ANDREA, CONNEELY, KAREN · 2015 to 2016
$994k
NIA NIH HHS U34 AG051418
6 · The paper itself

Abstract

DNA methylation (DNAm) has a well-established association with age in many tissues, including peripheral blood mononuclear cells (PBMCs). Compared to DNAm, the closely related epigenetic modification known as DNA hydroxymethylation (DNAhm) was much more recently discovered in mammals. Preliminary investigations have observed a positive correlation between gene body DNAhm and cis-gene expression. While some of these studies have observed an association between age and global DNAhm, none have investigated region-specific age-related DNAhm in human blood samples. In this study, we investigated DNAhm and gene expression in PBMCs of 10 young and 10 old, healthy female volunteers. Thousands of regions were differentially hydroxymethylated in the old vs. young individuals in gene bodies, exonic regions, enhancers, and promoters. Consistent with previous work, we observed directional consistency between age-related differences in DNAhm and gene expression. Further, age-related DNAhm and genes with high levels of DNAhm were enriched for immune system processes which may support a role of age-related DNAhm in immunosenescence.

Indexed as

DNA MethylationEpigenesis, GeneticAdultAgedAgingEnhancer Elements, GeneticEpigenomeExonsFemaleHumansImmunityOpen Reading FramesPromoter Regions, Genetic5hmC5mCAgeAgingDevelopmentDhMRDMREpigeneticsHydroxymethylationImmuneImmunosenescenceMethylation

Identifiers

PMID31506003
PMCPMC7028349
OpenAlexW2972313669

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.