ArticleJournal of chemical theory and computation2019
Docking Flexible Cyclic Peptides with
Article in Journal of chemical theory and computation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- Nodule Cysteine-Rich (NCR) Peptides as Next-Generation Antimicrobials: A Computational Perspective on Structure, Mechanism, and Drug Design.Probiotics and antimicrobial proteins · 2026Review
- Peptide-protein docking: from physics-based models to generative intelligence.Chemical communications (Cambridge, England) · 2026Review
- A Review of Current Computational Tools for Peptide-Protein Docking.Journal of computational chemistry · 2026Review
- Screening and analysis of malt pentapeptide DPP-IV inhibitory activity.NPJ science of food · 2025Article
- Improving the predictive performance of binding affinities and poses for protein-cyclic peptide complexes through fine-tuned MM/PBSA(GBSA)-based methods.Briefings in bioinformatics · 2025Article
- Flexible Docking of Cyclic Peptides to Proteins Using CABS-dock.Journal of chemical theory and computation · 2025Article
- Quadratic unconstrained binary optimization and constraint programming approaches for lattice-based cyclic peptide docking.Scientific reports · 2025Article
- Identification and Design of Novel Potential Antimicrobial Peptides Targeting Mycobacterial Protein Kinase PknB.The protein journal · 2024Article
- GAPS: a geometric attention-based network for peptide binding site identification by the transfer learning approach.Briefings in bioinformatics · 2024Article
- Article
- HighFold: accurately predicting structures of cyclic peptides and complexes with head-to-tail and disulfide bridge constraints.Briefings in bioinformatics · 2024Article
- Discovery and pharmacophoric characterization of chemokine network inhibitors using phage-display, saturation mutagenesis and computational modelling.Nature communications · 2023Article
- Design of Cyclic Peptides Targeting Protein-Protein Interactions Using AlphaFold.International journal of molecular sciences · 2023Article
- Predicting Protein-Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused Docking.Journal of chemical information and modeling · 2023Article
- Inferring Pathways of Oxidative Folding from Prefolding Free Energy Landscapes of Disulfide-Rich Toxins.The journal of physical chemistry. B · 2023Article
- Protocol for iterative optimization of modified peptides bound to protein targets.Journal of computer-aided molecular design · 2022Article
- Des3PI: a fragment-based approach to design cyclic peptides targeting protein-protein interactions.Journal of computer-aided molecular design · 2022Article
- Cyclization and Docking Protocol for Cyclic Peptide-Protein Modeling Using HADDOCK2.4.Journal of chemical theory and computation · 2022Article
- Accelerating AutoDock Vina with GPUs.Molecules (Basel, Switzerland) · 2022Article
- Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond.Journal of cheminformatics · 2022Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
While a new therapeutic cyclic peptide is approved nearly every year, docking large macrocycles has remained challenging. Here, we present a new version of our peptide docking software
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.