Evidence map›Paper›PMID 31505320›Full record

ArticleVirology2019

Structural characterization of the PCV2d virus-like particle at 3.3 Å resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.

Reza Khayat, Ke Wen, Aleksandra Alimova, Boris Gavrilov, Al Katz, Jose M Galarza, Paul Gottlieb

Abstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Reza KhayatDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA; Graduate Program in Biochemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA. Electronic address: rkhayat@ccny.cuny.edu.
Ke WenTechnoVax, Inc., 6 Westchester Plaza, Elmsford, NY, 10523, USA.
Aleksandra AlimovaCUNY School of Medicine, City College of New York, NY, 10031, USA.
Boris GavrilovBiologics Development, Huvepharma, 3A Nikolay Haytov Street, Sofia, 1113, Bulgaria.
Al KatzDepartment of Physics, City College of New York, New York, NY, 10031, USA.
Jose M GalarzaTechnoVax, Inc., 6 Westchester Plaza, Elmsford, NY, 10523, USA.
Paul GottliebCUNY School of Medicine, City College of New York, NY, 10031, USA.

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Mechanism of cellular recognition and entry by a circovirusSC1AI114843 · NIAID · CITY COLLEGE OF NEW YORK · PI KHAYAT, REZA · 2014 to 2017
$1.4M
NCRR NIH HHS P41 RR001209NIAID NIH HHS SC1 AI114843NIGMS NIH HHS P41 GM103310NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Porcine circovirus 2 (PCV2) has a major impact on the swine industry. Eight PCV2 genotypes (a-h) have been identified using capsid sequence analysis. PCV2d has been designated as the emerging genotype. The cryo-electron microscopy molecular envelope of PCV2d virus-like particles identifies differences between PCV2a, b and d genotypes that accompany the emergence of PCV2b from PCV2a, and PCV2d from PCV2b. These differences indicate that sequence analysis of genotypes is insufficient, and that it is important to determine the PCV2 capsid structure as the virus evolves. Structure-based sequence comparison demonstrate that each genotype possesses a unique combination of amino acids located on the surface of the capsid that undergo substitution. We also demonstrate that the capsid N-terminus moves in response to increasing amount of nucleic acid packaged into the capsid. Furthermore, we model a tetranucleotide between the 5- and 2-fold axes of symmetry that appears to be responsible for capsid stability.

Indexed as

Amino Acid SubstitutionCapsidCircovirusCryoelectron MicroscopyGenotypeVirosomesVirosomesCapsid structureCircovirusCryo-electron microscopyVirus evolutionVirus-like particle (VLP)

Identifiers

PMID31505320
PMCPMC6958667

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.