Evidence map›Paper›PMID 31504762›Full record

ArticleJournal of experimental botany2019

Protein phosphatase 2A regulates the nuclear accumulation of the Arabidopsis bZIP protein VIP1 under hypo-osmotic stress.

Daisuke Tsugama, Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Calcium signaling-mediated transcriptional reprogramming during abiotic stress response in plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  9. Review
  10. Article
  11. International journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
  14. International journal of molecular sciences · 2021
    Article
  15. Genomic Analysis of Soybean PP2A-BFrontiers in plant science · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Biodesign research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Daisuke TsugamaAsian Natural Environmental Science Center (ANESC), The University of Tokyo, Midori-cho, Nishitokyo-shi, Tokyo, Japan.
Hyuk Sung YoonAsian Natural Environmental Science Center (ANESC), The University of Tokyo, Midori-cho, Nishitokyo-shi, Tokyo, Japan.
Kaien FujinoLaboratory of Crop Physiology, Research Faculty of Agriculture, Hokkaido University, Kita 9 Nishi 9 Kita-ku, Sapporo-shi, Hokkaido, Japan.
Shenkui LiuState Key Laboratory of Subtropical Silviculture, Zhejiang A & F University, Lin'an, Hangzhou, PR China.
Tetsuo TakanoAsian Natural Environmental Science Center (ANESC), The University of Tokyo, Midori-cho, Nishitokyo-shi, Tokyo, Japan.
Hokkaido University · JPThe University of Tokyo · JPZhejiang A & F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VIP1 is a bZIP transcription factor in Arabidopsis thaliana. When cells are exposed to mechanical stress, VIP1 transiently accumulates in the nucleus, where it regulates the expression of its target genes and suppresses mechanical stress-induced root waving. The nuclear-cytoplasmic shuttling of VIP1 is regulated by phosphorylation and calcium-dependent signaling, but specific regulators of these processes remain to be identified. Here, inhibitors of protein phosphatase 2A (PP2A) are shown to inhibit both the mechanical stress-induced dephosphorylation and nuclear accumulation of VIP1. The PP2A B subunit, which recruits substrates of PP2A holoenzyme, is classified into B, B', B'', and B''' families. Using bimolecular fluorescence complementation, in vitro pull-down, and yeast two-hybrid assays, we show that VIP1 interacts with at least two of the six members of the Arabidopsis PP2A B''-family subunit, which have calcium-binding EF-hand motifs. VIP1AAA, a constitutively nuclear-localized VIP1 variant with substitutions in putative phosphorylation sites of VIP1, suppressed the root waving induced by VIP1-SRDX (a repression domain-fused variant of VIP1). These results support the idea that VIP1 is dephosphorylated by PP2A and that the dephosphorylation suppresses the root waving. The phosphorylation sites of VIP1 and its homologs were narrowed down by in vitro phosphorylation, yeast two-hybrid, and protein subcellular localization assays.

Indexed as

Osmotic PressureArabidopsisArabidopsis ProteinsCell NucleusPhosphorylationPlant RootsProtein BindingProtein Kinase InhibitorsProtein Phosphatase 2Protein SubunitsArabidopsis ProteinsPP2A protein, ArabidopsisProtein Kinase InhibitorsProtein Phosphatase 2Protein SubunitsVIP1 protein, ArabidopsisArabidopsis thalianacalciummechanical stressnuclear–cytoplasmic shuttlingprotein phosphatase 2Aroot tropismstranscription factor

Identifiers

PMID31504762
PMCPMC6859724
OpenAlexW2969989516

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.