Evidence map›Paper›PMID 31504472›Full record

ArticleGenome biology and evolution2019

Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella Species.

Laura Gomez-Valero, Alvaro Chiner-Oms, Iñaki Comas, Carmen Buchrieser

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Molecular evolution and adaptations ofFrontiers in cellular and infection microbiology · 2026
    Review
  5. Article
  6. In situ structures of theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Membrane association and polar localization of theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Structure and Function of the Dot/Icm T4SS.bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 2 countries.

Laura Gomez-ValeroInstitut Pasteur, Departement of Microbiology, Biologie des Bactéries Intracellulaires, Paris, France.
Alvaro Chiner-OmsUnidad Mixta "Infección y Salud Pública" FISABIO-CSISP/Universidad de Valencia, Instituto de Biología Integrativa de Sistemas, Spain.
Iñaki ComasCIBER en Epidemiología y Salud Pública, Valencia, Spain.
Carmen BuchrieserInstitut Pasteur, Departement of Microbiology, Biologie des Bactéries Intracellulaires, Paris, France.
Centre National de la Recherche Scientifique · FRInstituto de Biomedicina de Valencia · ESInstitut Pasteur · FRUniversitat de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Dot/Icm type IVB secretion system of Legionella pneumophila is essential for its pathogenesis by delivering >300 effector proteins into the host cell. However, their precise secretion mechanism and which components interact with the host cell is only partly understood. Here, we undertook evolutionary analyses of the Dot/Icm system of 58 Legionella species to identify those components that interact with the host and/or the substrates. We show that high recombination rates are acting on DotA, DotG, and IcmX, supporting exposure of these proteins to the host. Specific amino acids under positive selection on the periplasmic region of DotF, and the cytoplasmic domain of DotM, support a role of these regions in substrate binding. Diversifying selection acting on the signal peptide of DotC suggests its interaction with the host after cleavage. Positive selection acts on IcmR, IcmQ, and DotL revealing that these components are probably participating in effector recognition and/or translocation. Furthermore, our results predict the participation in host/effector interaction of DotV and IcmF. In contrast, DotB, DotO, most of the core subcomplex elements, and the chaperones IcmS-W show a high degree of conservation and not signs of recombination or positive selection suggesting that these proteins are under strong structural constraints and have an important role in maintaining the architecture/function of the system. Thus, our analyses of recombination and positive selection acting on the Dot/Icm secretion system predicted specific Dot/Icm components and regions implicated in host interaction and/or substrate recognition and translocation, which will guide further functional analyses.

Indexed as

Type IV Secretion SystemsBacterial ProteinsCarrier ProteinsEvolution, MolecularGenomicsLegionellaMembrane ProteinsPhylogenyRecombination, GeneticSelection, GeneticBacterial ProteinsCarrier ProteinsMembrane ProteinsType IV Secretion Systemsdiversifying-selectionDot/Icm systemevolutionLegionellanegative-selectionpositive-selection

Identifiers

PMID31504472
PMCPMC6761968
OpenAlexW2970353876

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.