Evidence map›Paper›PMID 31504465›Full record

ArticleFEMS microbiology ecology2019

Characterization of the microbiome and bioluminescent symbionts across life stages of Ceratioid Anglerfishes of the Gulf of Mexico.

Lindsay L Freed, Cole Easson, Lydia J Baker, Danté Fenolio, Tracey T Sutton, Yasmin Khan, Patricia Blackwelder, Tory A Hendry, Jose V Lopez

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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  11. Review
  12. Acquisition of bioluminescent trait by non-luminous organisms from luminous organisms through various origins.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Review
  13. Article
  14. Frontiers in immunology · 2021
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Lindsay L FreedHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Cole EassonHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Lydia J BakerDepartment of Microbiology, Cornell University, Ithaca, NY, 14850 USA.
Danté FenolioCenter for Conservation and Research, San Antonio Zoo, San Antonio, TX, 78212 USA.
Tracey T SuttonHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Yasmin KhanHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Patricia BlackwelderHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Tory A HendryDepartment of Microbiology, Cornell University, Ithaca, NY, 14850 USA.
Jose V LopezHalmos College of Natural Sciences and Oceanography, Nova Southeastern University, Dania Beach, FL, 33004 USA.
Nova Southeastern University · USCornell University · USUniversity of Miami · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interdependence of diverse organisms through symbiosis reaches even the deepest parts of the oceans. As part of the DEEPEND project (deependconsortium.org) research on deep Gulf of Mexico biodiversity, we profiled the bacterial communities ('microbiomes') and luminous symbionts of 36 specimens of adult and larval deep-sea anglerfishes of the suborder Ceratioidei using 16S rDNA. Transmission electron microscopy was used to characterize the location of symbionts in adult light organs (esca). Whole larval microbiomes, and adult skin and gut microbiomes, were dominated by bacteria in the genera Moritella and Pseudoalteromonas. 16S rDNA sequencing results from adult fishes corroborate the previously published identity of ceratioid bioluminescent symbionts and support the findings that these symbionts do not consistently exhibit host specificity at the host family level. Bioluminescent symbiont amplicon sequence variants were absent from larval ceratioid samples, but were found at all depths in the seawater, with a highest abundance found at mesopelagic depths. As adults spend the majority of their lives in the meso- and bathypelagic zones, the trend in symbiont abundance is consistent with their life history. These findings support the hypothesis that bioluminescent symbionts are not present throughout host development, and that ceratioids acquire their bioluminescent symbionts from the environment.

Indexed as

MicrobiotaSymbiosisAnimalsBacteriaBiodiversityDNA, BacterialDNA, RibosomalFishesGulf of AmericaHost SpecificityLuminescencePhylogenyRNA, Ribosomal, 16SSeawaterSkinDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S16S rRNAanglerfish microbiomebioluminescenceCeratioideiGulf of Mexicosymbiosis

Identifiers

PMID31504465
PMCPMC6778416
OpenAlexW2973134889

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.