Evidence map›Paper›PMID 31504463›Full record

ArticlePathogens and disease2019

Transcriptional signatures of Mycobacterium tuberculosis in mouse model of intraocular tuberculosis.

Sudhanshu Abhishek, Michelle Beth Ryndak, Alpa Choudhary, Sumedha Sharma, Amod Gupta, Vishali Gupta, Nirbhai Singh, Suman Laal, Indu Verma

Open access · greenAbstract read
In one paragraph

Article in Pathogens and disease, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Ocular tuberculosis: Where are we today?Indian journal of ophthalmology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sudhanshu AbhishekDepartment of Biochemistry, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Michelle Beth RyndakDepartment of Pathology, New York University Langone Medical Center, New York, NY 10010, USA.
Alpa ChoudharyDepartment of Biochemistry, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Sumedha SharmaDepartment of Biochemistry, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Amod GuptaDepartment of Ophthalmology, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Vishali GuptaDepartment of Ophthalmology, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Nirbhai SinghDepartment of Ophthalmology, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Suman LaalDepartment of Pathology, New York University Langone Medical Center, New York, NY 10010, USA.
Indu VermaDepartment of Biochemistry, Postgraduate Institute of Medical Education and Research, Chandigarh 160012, India.
Post Graduate Institute of Medical Education and Research · INNYU Langone Health · USVA NY Harbor Healthcare System · US

Funding

Research Training on Pathogenesis and Diagnosis of HIV-TBD43TW009588 · FIC · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LAAL, SUMAN · 2014 to 2018
$1.6M
FIC NIH HHS D43 TW009588
6 · The paper itself

Abstract

backgroundStudies on human intraocular tuberculosis (IOTB) are extremely challenging. For understanding the pathogenesis of IOTB, it is important to investigate the mycobacterial transcriptional changes in ocular environment.

methodsMice were challenged intravenously with Mycobacterium tuberculosis H37Rv and at 45 days post-infection, experimental IOTB was confirmed based on bacteriological and molecular assays. M. tuberculosis transcriptome was analyzed in the infected eyes using microarray technology. The identified M. tuberculosis signature genes were further validated and investigated in human IOTB samples using real-time polymerase chain reaction.

resultsFollowing intravenous challenge with M. tuberculosis, 45% (5/12) mice showed bacilli in the eyes with positivity for M. tuberculosis ribonucleic acid in 100% (12/12), thus confirming the paucibacillary nature of IOTB similar to human IOTB. M. tuberculosis transcriptome in these infected eyes showed significant upregulation of 12 M. tuberculosis genes and five of these transcripts (Rv0962c, Rv0984, Rv2612c, Rv0974c and Rv0971c) were also identified in human clinically confirmed cases of IOTB.

conclusionsDifferentially expressed mycobacterial genes identified in an intravenously challenged paucibacillary mouse IOTB model and presence of these transcripts in human IOTB samples highlight the possible role of these genes for survival of M. tuberculosis in the ocular environment, thus contributing to pathogenesis of IOTB.

Indexed as

TranscriptomeAnimalsDisease Models, AnimalHumansMiceMicroarray AnalysisMycobacterium tuberculosisReal-Time Polymerase Chain ReactionTuberculosis, OcularVirulence FactorsVirulence Factorshuman vitreous sampleintraocular tuberculosismicroarraymouse modelMycobacterium tuberculosis H37Rvtranscriptome

Identifiers

PMID31504463
PMCPMC7137459
OpenAlexW2972094210

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.