Evidence map›Paper›PMID 31504246›Full record

ArticleBrain : a journal of neurology2019

De novo variants in PAK1 lead to intellectual disability with macrocephaly and seizures.

Susanne Horn, Margaret Au, Lina Basel-Salmon, Pinar Bayrak-Toydemir, Alexander Chapin, Lior Cohen, Mariet W Elting, John M Graham, Claudia Gonzaga-Jauregui, Osnat Konen and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 4 countries.

Susanne HornInstitute of Human Genetics, University Medical Center Leipzig, Leipzig, Germany.
Margaret AuDepartment of Pediatrics, Cedars Sinai Medical Center, David Geffen School of Medicine at UCLA, Los Angeles, California, USA.
Lina Basel-SalmonRaphael Recanati Genetic Institute, Rabin Medical Center-Beilinson Hospital, Petach Tikva, Israel.
Pinar Bayrak-ToydemirDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT, USA; ARUP Laboratories, Salt Lake City, UT, USA.
Alexander ChapinARUP Laboratories, Salt Lake City, UT, USA.
Lior CohenRaphael Recanati Genetic Institute, Rabin Medical Center-Beilinson Hospital, Petach Tikva, Israel.
Mariet W EltingAmsterdam UMC, Vrije Universiteit Amsterdam, Department of Clinical Genetics, De Boelelaan 1117, Amsterdam, The Netherlands.
John M GrahamDepartment of Pediatrics, Cedars Sinai Medical Center, David Geffen School of Medicine at UCLA, Los Angeles, California, USA.
Claudia Gonzaga-JaureguiRegeneron Genetics Center, Regeneron Pharmaceuticals Inc., Tarrytown, NY, USA.
Osnat KonenSackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
Max HolzerDepartment for Molecular and Cellular Mechanisms of Neurodegeneration, Paul Flechsig Institute for Brain Research, University of Leipzig, Leipzig, Germany.
Johannes LemkeInstitute of Human Genetics, University Medical Center Leipzig, Leipzig, Germany.
Christine E MillerARUP Laboratories, Salt Lake City, UT, USA.
Linda K ReyInstitute of Human Genetics, University Hospital Duesseldorf, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany.
Nicole I WolfDepartment of Child Neurology, Emma Children's Hospital, Amsterdam UMC, Vrije Universiteit Amsterdam, and Amsterdam Neuroscience, Amsterdam, The Netherlands.
Marjan M WeissAmsterdam UMC, Vrije Universiteit Amsterdam, Department of Clinical Genetics, De Boelelaan 1117, Amsterdam, The Netherlands.
Quinten WaisfiszAmsterdam UMC, Vrije Universiteit Amsterdam, Department of Clinical Genetics, De Boelelaan 1117, Amsterdam, The Netherlands.
Ghayda M MirzaaCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA.
Dagmar WieczorekInstitute of Human Genetics, University Hospital Duesseldorf, Heinrich-Heine-University Duesseldorf, Duesseldorf, Germany.
Heinrich StichtInstitute of Biochemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
Rami Abou JamraInstitute of Human Genetics, University Medical Center Leipzig, Leipzig, Germany.
Leipzig University · DEAmsterdam University Medical Centers · NLARUP Laboratories (United States) · USCedars-Sinai Medical Center · USDüsseldorf University Hospital · DERafael Advanced Defense Systems (Israel) · ILEmma Kinderziekenhuis · NLFriedrich-Alexander-Universität Erlangen-Nürnberg · DERegeneron (United States) · USTel Aviv University · ILUniversity of Utah · USUniversity of Washington · US

Funding

Genes and pathways underlying brain overgrowth and focal cortical malformationsK08NS092898 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MIRZAA, GHAYDA · 2015 to 2019
$930k
NINDS NIH HHS K08 NS092898
6 · The paper itself

Abstract

Using trio exome sequencing, we identified de novo heterozygous missense variants in PAK1 in four unrelated individuals with intellectual disability, macrocephaly and seizures. PAK1 encodes the p21-activated kinase, a major driver of neuronal development in humans and other organisms. In normal neurons, PAK1 dimers reside in a trans-inhibited conformation, where each autoinhibitory domain covers the kinase domain of the other monomer. Upon GTPase binding via CDC42 or RAC1, the PAK1 dimers dissociate and become activated. All identified variants are located within or close to the autoinhibitory switch domain that is necessary for trans-inhibition of resting PAK1 dimers. Protein modelling supports a model of reduced ability of regular autoinhibition, suggesting a gain of function mechanism for the identified missense variants. Alleviated dissociation into monomers, autophosphorylation and activation of PAK1 influences the actin dynamics of neurite outgrowth. Based on our clinical and genetic data, as well as the role of PAK1 in brain development, we suggest that gain of function pathogenic de novo missense variants in PAK1 lead to moderate-to-severe intellectual disability, macrocephaly caused by the presence of megalencephaly and ventriculomegaly, (febrile) seizures and autism-like behaviour.

Indexed as

ActinsAdolescentAutistic Disordercdc42 GTP-Binding ProteinChildChild, PreschoolExome SequencingFemaleGTP PhosphohydrolasesHumansIntellectual DisabilityMaleMegalencephalyModels, MolecularMutation, Missensep21-Activated KinasesActinscdc42 GTP-Binding ProteinCDC42 protein, humanGTP Phosphohydrolasesp21-Activated KinasesPAK1 protein, humanrac1 GTP-Binding ProteinRAC1 protein, humande novoexome sequencingintellectual disabilitymacrocephalyseizures

Identifiers

PMID31504246
PMCPMC6821231
OpenAlexW2970790766

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.