Evidence map›Paper›PMID 31503454›Full record

ArticleBiochemistry2019

Structure of a Ferryl Mimic in the Archetypal Iron(II)- and 2-(Oxo)-glutarate-Dependent Dioxygenase, TauD.

Katherine M Davis, Madison Altmyer, Ryan J Martinie, Irene Schaperdoth, Carsten Krebs, J Martin Bollinger, Amie K Boal

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 43 citations in OpenAlex.

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  13. Applied magnetic resonance · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Katherine M DavisORCID 0000-0002-0258-8907
Madison Altmyer
Irene Schaperdoth
J Martin BollingerORCID 0000-0003-0751-8585
Pennsylvania State University · US

Funding

Mapping the Structural Basis for Mechanistic Diversity in Metalloenzyme SuperfamiliesR35GM119707 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Amie K Boal · 2016 to 2026
$5.0M
Mechanisms of Mononuclear non-Heme-Iron EnzymesR35GM127079 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CARSTEN KREBS · 2018 to 2026
$3.8M
Mechanism of Taurine: Alpha-Ketoglutarate DioxygenaseR01GM069657 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BOLLINGER, JOSEPH M, KREBS, CARSTEN · 2004 to 2016
$2.7M
Mechanisms and Reprogramming of Iron/2-Oxoglutarate Desaturases and OxacyclasesR01GM118812 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOLLINGER, JOSEPH M, KREBS, CARSTEN · 2016 to 2019
$1.0M
Learning the Steps to Metalloenzyme ChoreographyK99GM129460 · NIGMS · PRINCETON UNIVERSITY · PI DAVIS, KATHERINE MARIE · 2018 to 2019
$123k
NIGMS NIH HHS K99 GM129460NIGMS NIH HHS R01 GM069657NIGMS NIH HHS R01 GM118812NIGMS NIH HHS R35 GM119707NIGMS NIH HHS R35 GM127079
6 · The paper itself

Abstract

Iron(II)- and 2-(oxo)-glutarate-dependent (Fe/2OG) oxygenases catalyze a diverse array of oxidation reactions via a common iron(IV)-oxo (ferryl) intermediate. Although the intermediate has been characterized spectroscopically, its short lifetime has precluded crystallograhic characterization. In solution, the ferryl was first observed directly in the archetypal Fe/2OG hydroxylase, taurine:2OG dioxygenase (TauD). Here, we substitute the iron cofactor of TauD with the stable vanadium(IV)-oxo (vanadyl) ion to obtain crystal structures mimicking the key ferryl complex. Intriguingly, whereas the structure of the TauD·(V

Indexed as

Molecular MimicryCatalytic DomainCrystallizationCrystallography, X-RayEscherichia coliHydrogen BondingHydroxylationIronMixed Function OxygenasesProtein Structure, SecondarySuccinic AcidTaurineVanadatesX-Ray Absorption Spectroscopyferryl ironIronMixed Function OxygenasesSuccinic AcidTaurinetaurine-alpha-ketoglutarate dioxygenaseVanadates

Identifiers

PMID31503454
PMCPMC6800575
OpenAlexW2972880706

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.