Evidence map›Paper›PMID 31503416›Full record

ArticleCurrent protocols in molecular biology2019

Auxin-Inducible Degron System for Depletion of Proteins in Saccharomyces cerevisiae.

Ameet Shetty, Natalia I Reim, Fred Winston

Open access · greenAbstract read
In one paragraph

Article in Current protocols in molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

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  11. Condensin Accelerates Long-Range Intra-Chromosomal Interactions.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ameet ShettyDepartment of Genetics, Harvard Medical School, Boston, Massachusetts.
Natalia I ReimDepartment of Genetics, Harvard Medical School, Boston, Massachusetts.
Fred WinstonDepartment of Genetics, Harvard Medical School, Boston, Massachusetts.
Harvard University · US

Funding

Analysis of the Essential Transcription Factors Spt5 and Spn1/Iws1R01GM120038 · NIGMS · HARVARD MEDICAL SCHOOL · PI WINSTON, FRED M. · 2017 to 2020
$2.0M
Functional analysis of the conserved transcription elongation factor Spn1F31GM112370 · NIGMS · HARVARD MEDICAL SCHOOL · PI REIM RODRIGUEZ, NATALIA ISABEL · 2014 to 2016
$96k
NIGMS NIH HHS F31 GM112370NIGMS NIH HHS R01 GM120038
6 · The paper itself

Abstract

The auxin-inducible degron (AID) is a powerful tool that is used for depletion of proteins to study their function in vivo. This method can conditionally induce the degradation of any protein by the proteasome simply by the addition of the plant hormone auxin. This approach is particularly valuable to study the function of essential proteins. The protocols provided here describe the steps to construct the necessary strains and to optimize auxin-inducible depletion in Saccharomyces cerevisiae. © 2019 by John Wiley & Sons, Inc. Basic Protocol 1: Construction of TIR1-expressing strains by transformation Basic Protocol 2: Tagging a yeast protein of interest with an auxin-inducible degron Support Protocol: Construction of depletion strains by genetic crosses Basic Protocol 3: Optimization for depletion of the auxin-inducible-degron-tagged protein.

Indexed as

Arabidopsis ProteinsF-Box ProteinsIndoleacetic AcidsPlant Growth RegulatorsProteolysisReceptors, Cell SurfaceSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitin-Protein LigasesArabidopsis ProteinsF-Box ProteinsIndoleacetic AcidsPlant Growth RegulatorsReceptors, Cell SurfaceSaccharomyces cerevisiae ProteinsTIR1 protein, ArabidopsisUbiquitin-Protein Ligasesauxinconditional depletiondegronyeast

Identifiers

PMID31503416
PMCPMC6741457
OpenAlexW2971597953

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.