Evidence map›Paper›PMID 31501960›Full record

ArticleJournal of industrial microbiology & biotechnology2019

Deletion of PHO13 improves aerobic L-arabinose fermentation in engineered Saccharomyces cerevisiae.

Suji Ye, Deokyeol Jeong, Jong Cheol Shon, Kwang-Hyeon Liu, Kyoung Heon Kim, Minhye Shin, Soo Rin Kim

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptomic Changes Induced by Deletion of Transcriptional RegulatorFrontiers in bioengineering and biotechnology · 2021
    Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Suji YeSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Deokyeol JeongSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Jong Cheol ShonDepartment of Environmental Toxicology Research Center, Korea Institute of Toxicology, Jinju, Republic of Korea.
Kwang-Hyeon LiuCollege of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu, Republic of Korea.
Kyoung Heon KimDepartment of Biotechnology, Graduate School, Korea University, Seoul, Republic of Korea.
Minhye ShinDepartment of Biotechnology, Graduate School, Korea University, Seoul, Republic of Korea. alsgp01@korea.ac.kr.ORCID http://orcid.org/0000-0002-3649-4570
Soo Rin KimSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea. soorinkim@knu.ac.kr.
Kyungpook National University · KRKorea University · KR

Funding

Rural Development Administration PJ01279801
6 · The paper itself

Abstract

Pentose sugars are increasingly being used in industrial applications of Saccharomyces cerevisiae. Although L-arabinose is a highlighted pentose that has been identified as next-generation biomass, arabinose fermentation has not yet undergone extensive development for industrial utilization. In this study, we integrated a heterologous fungal arabinose pathway with a deletion of PHO13 phosphatase gene. PHO13 deletion increased arabinose consumption rate and specific ethanol productivity under aerobic conditions and consequently depleted sedoheptulose by activation of the TAL1 gene. Global metabolite profiling indicated upregulation of the pentose phosphate pathway and downstream effects such as trehalose accumulation and downregulation of the TCA cycle. Our results suggest that engineering of PHO13 has ample potential for arabinose conversion to ethanol as an industrial source for biofuels.

Indexed as

AerobiosisArabinoseEthanolFermentationHeptosesPentose Phosphate PathwayPhosphoric Monoester HydrolasesProtein EngineeringSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionArabinoseEthanolHeptosesPho13 protein, S cerevisiaePhosphoric Monoester HydrolasesSaccharomyces cerevisiae ProteinssedoheptuloseL-arabinosePHO13SedoheptuloseTAL1

Identifiers

PMID31501960
OpenAlexW2972337741

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.