Evidence map›Paper›PMID 31501870›Full record

ArticleMolecular biology and evolution2020

Adaptive Radiation of the Flukes of the Family Fasciolidae Inferred from Genome-Wide Comparisons of Key Species.

Young-Jun Choi, Santiago Fontenla, Peter U Fischer, Thanh Hoa Le, Alicia Costábile, David Blair, Paul J Brindley, Jose F Tort, Miguel M Cabada, Makedonka Mitreva

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 45 citations in OpenAlex.

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  9. Trematode Genomics and Proteomics.Advances in experimental medicine and biology · 2024
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  10. Natural variation in the binding pocket of a parasitic flatworm TRPM channel resolves the basis for praziquantel sensitivity.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  11. Article
  12. Molecular characterization ofFrontiers in veterinary science · 2023
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  13. Review
  14. Potential Hybridization ofPathogens (Basel, Switzerland) · 2022
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  15. Article
  16. Molecular omics · 2022
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  17. Paleobiogeographical origins ofFrontiers in veterinary science · 2022
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  18. Review
  19. Article
  20. Proteomic Analysis ofPathogens (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 4 countries.

Young-Jun ChoiMcDonnell Genome Institute at Washington University in St. Louis, St. Louis, MO.
Santiago FontenlaDepartamento de Genética, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay.
Peter U FischerDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, MO.
Thanh Hoa LeImmunology Department, Institute of Biotechnology, Vietnam Academy of Science and Technology, Hanoi, Vietnam.
Alicia CostábileDepartamento de Genética, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay.
David BlairCollege of Science and Engineering, James Cook University, Townsville, QLD, Australia.
Paul J BrindleyDepartment of Microbiology, Immunology and Tropical Medicine, and Research Center for Neglected Diseases of Poverty, School of Medicine & Health Sciences, George Washington University, Washington, DC.
Jose F TortDepartamento de Genética, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay.
Miguel M CabadaDivision of Infectious Diseases, Department of Medicine, School of Medicine, University of Texas Medical Branch, Galveston, TX.
Makedonka MitrevaMcDonnell Genome Institute at Washington University in St. Louis, St. Louis, MO.
Universidad de la República de Uruguay · UYJames S. McDonnell Foundation · USGeorge Washington University · USJames Cook University · AUThe University of Texas Medical Branch at Galveston · USVietnam Academy of Science and Technology · VNWashington University in St. Louis · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR01AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2009 to 2018
$3.1M
EVOLUTION OF THE NEMATODE INTESTINE, A KEY HOST INTERFACER01GM097435 · NIGMS · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2011 to 2019
$2.1M
Markers of Triclabendazole Resistant Fascioliasis in the Highlands of PeruR01AI146353 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI CABADA, MIGUEL MAURICIO, MITREVA, MAKEDONKA · 2019 to 2022
$2.0M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR56AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2019 to 2019
$697k
NHGRI NIH HHS U54 HG003079NIAID NIH HHS R01 AI081803NIAID NIH HHS R01 AI146353NIAID NIH HHS R56 AI081803NIGMS NIH HHS R01 GM097435
6 · The paper itself

Abstract

Liver and intestinal flukes of the family Fasciolidae cause zoonotic food-borne infections that impact both agriculture and human health throughout the world. Their evolutionary history and the genetic basis underlying their phenotypic and ecological diversity are not well understood. To close that knowledge gap, we compared the whole genomes of Fasciola hepatica, Fasciola gigantica, and Fasciolopsis buski and determined that the split between Fasciolopsis and Fasciola took place ∼90 Ma in the late Cretaceous period, and that between 65 and 50 Ma an intermediate host switch and a shift from intestinal to hepatic habitats occurred in the Fasciola lineage. The rapid climatic and ecological changes occurring during this period may have contributed to the adaptive radiation of these flukes. Expansion of cathepsins, fatty-acid-binding proteins, protein disulfide-isomerases, and molecular chaperones in the genus Fasciola highlights the significance of excretory-secretory proteins in these liver-dwelling flukes. Fasciola hepatica and Fasciola gigantica diverged ∼5 Ma near the Miocene-Pliocene boundary that coincides with reduced faunal exchange between Africa and Eurasia. Severe decrease in the effective population size ∼10 ka in Fasciola is consistent with a founder effect associated with its recent global spread through ruminant domestication. G-protein-coupled receptors may have key roles in adaptation of physiology and behavior to new ecological niches. This study has provided novel insights about the genome evolution of these important pathogens, has generated genomic resources to enable development of improved interventions and diagnosis, and has laid a solid foundation for genomic epidemiology to trace drug resistance and to aid surveillance.

Indexed as

Biological EvolutionGenome, HelminthAnimalsFasciolidaeMultigene Familyadaptive radiationFasciola giganticaFasciola hepaticaFasciolopsis buskifood–borne flukesgenome evolution

Identifiers

PMID31501870
PMCPMC7528651
OpenAlexW2978724020

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.