Evidence map›Paper›PMID 31501561›Full record

ArticleNature biotechnology2019

Multi-input chemical control of protein dimerization for programming graded cellular responses.

Glenna Wink Foight, Zhizhi Wang, Cindy T Wei, Per Jr Greisen, Katrina M Warner, Daniel Cunningham-Bryant, Keunwan Park, T J Brunette, William Sheffler, David Baker and 1 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 86 citations in OpenAlex.

  1. AI-GuidedJournal of the American Chemical Society · 2026
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  16. De Novo Design of High-Performance Cortisol Luminescent Biosensors.Journal of the American Chemical Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Glenna Wink FoightDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Zhizhi WangInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Cindy T WeiDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Per Jr GreisenInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Katrina M WarnerDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Daniel Cunningham-BryantDepartment of Chemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-0756-475X
Keunwan ParkInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-8783-9495
T J BrunetteInstitute for Protein Design, University of Washington, Seattle, WA, USA.
William ShefflerInstitute for Protein Design, University of Washington, Seattle, WA, USA.
David BakerInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Dustin J MalyDepartment of Chemistry, University of Washington, Seattle, WA, USA. djmaly@uw.edu.ORCID http://orcid.org/0000-0003-0094-0177
University of Washington · USHoward Hughes Medical Institute · USNovo Nordisk (Denmark) · DK

Funding

New Molecular Probes For Protein KinasesR01GM086858 · NIGMS · UNIVERSITY OF WASHINGTON · PI MALY, DUSTIN J · 2008 to 2025
$5.5M
Leica SP8 WWL Confocal MicroscopeS10OD016240 · OD · UNIVERSITY OF WASHINGTON · PI CATTERALL, WILLIAM A · 2014 to 2014
$581k
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM086858NIH HHS S10 OD016240
6 · The paper itself

Abstract

Chemical and optogenetic methods for post-translationally controlling protein function have enabled modulation and engineering of cellular functions. However, most of these methods only confer single-input, single-output control. To increase the diversity of post-translational behaviors that can be programmed, we built a system based on a single protein receiver that can integrate multiple drug inputs, including approved therapeutics. Our system translates drug inputs into diverse outputs using a suite of engineered reader proteins to provide variable dimerization states of the receiver protein. We show that our single receiver protein architecture can be used to program a variety of cellular responses, including graded and proportional dual-output control of transcription and mammalian cell signaling. We apply our tools to titrate the competing activities of the Rac and Rho GTPases to control cell morphology. Our versatile tool set will enable researchers to post-translationally program mammalian cellular processes and to engineer cell therapies.

Indexed as

AnimalsCell LineCombinatorial Chemistry TechniquesDrug DesignHeLa CellsHumansMiceModels, MolecularNIH 3T3 CellsOptogeneticsProtein ConformationProtein MultimerizationProtein Processing, Post-TranslationalProteinsSignal TransductionSynthetic BiologyProteins

Identifiers

PMID31501561
PMCPMC6776690
OpenAlexW2972321369

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.