Evidence map›Paper›PMID 31501530›Full record

ArticleNature plants2019

COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins.

Ruben Vanholme, Lisa Sundin, Keletso Carol Seetso, Hoon Kim, Xinyu Liu, Jin Li, Barbara De Meester, Lennart Hoengenaert, Geert Goeminne, Kris Morreel and 6 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 117 citations in OpenAlex.

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  16. Engineering yeast to produce fraxetin from ferulic acid and lignin.Applied microbiology and biotechnology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Ruben Vanholme *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Lisa Sundin *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Keletso Carol SeetsoDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Hoon KimDepartment of Biochemistry and the DOE Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin, Madison, WI, USA.ORCID http://orcid.org/0000-0001-7425-7464
Xinyu LiuDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Jin LiDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Barbara De MeesterDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Lennart HoengenaertDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Geert GoeminneDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Kris MorreelDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Jurgen HaustraeteProtein Core, VIB-UGent Center for Inflammation Research, VIB, Ghent University, Ghent, Belgium.
Huei-Hsuan TsaiInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-5166-2181
Wolfgang SchmidtInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-7850-6832
Bartel VanholmeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
John RalphDepartment of Biochemistry and the DOE Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin, Madison, WI, USA.ORCID http://orcid.org/0000-0002-6093-4521
Wout BoerjanDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. wout.boerjan@ugent.vib.be.ORCID http://orcid.org/0000-0003-1495-510X
Ghent University · BENational Chung Hsing University · TWUniversity of Wisconsin–Madison · USVIB-UGent Center for Inflammation Research · BEVIB-UGent Center for Plant Systems Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coumarins, also known as 1,2-benzopyrones, comprise a large class of secondary metabolites that are ubiquitously found throughout the plant kingdom. In many plant species, coumarins are particularly important for iron acquisition and plant defence. Here, we show that COUMARIN SYNTHASE (COSY) is a key enzyme in the biosynthesis of coumarins. Arabidopsis thaliana cosy mutants have strongly reduced levels of coumarin and accumulate o-hydroxyphenylpropanoids instead. Accordingly, cosy mutants have reduced iron content and show growth defects when grown under conditions in which there is a limited availability of iron. Recombinant COSY is able to produce umbelliferone, esculetin and scopoletin from their respective o-hydroxycinnamoyl-CoA thioesters by two reaction steps-a trans-cis isomerization followed by a lactonization. This conversion happens partially spontaneously and is catalysed by light, which explains why the need for an enzyme for this conversion has been overlooked. The combined results show that COSY has an essential function in the biosynthesis of coumarins in organs that are shielded from light, such as roots. These findings provide routes to improving coumarin production in crops or by microbial fermentation.

Indexed as

ArabidopsisArabidopsis ProteinsCatalysisCoumarinsGlycosidesIsomerismMutationPlant RootsPregnenoloneScopoletinUmbelliferones7-hydroxycoumarinArabidopsis ProteinsCoumarinsesculentin steroidGlycosidesPregnenoloneScopoletinUmbelliferones

Identifiers

PMID31501530
OpenAlexW2972983807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.