Evidence map›Paper›PMID 31501524›Full record

ArticleScientific reports2019

Yeast PAF1 complex counters the pol III accumulation and replication stress on the tRNA genes.

Pratibha Bhalla, Ashutosh Shukla, Dipti Vinayak Vernekar, Aneeshkumar Gopalakrishnan Arimbasseri, Kuljeet Singh Sandhu, Purnima Bhargava

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Pratibha BhallaCentre for Cellular and Molecular Biology (Council of Scientific and Industrial Research), Hyderabad, India.
Ashutosh ShuklaCentre for Cellular and Molecular Biology (Council of Scientific and Industrial Research), Hyderabad, India.
Dipti Vinayak VernekarCentre for Cellular and Molecular Biology (Council of Scientific and Industrial Research), Hyderabad, India.
Aneeshkumar Gopalakrishnan ArimbasseriMolecular Genetics Laboratory, National Institute of Immunology, New Delhi, India.
Kuljeet Singh SandhuDepartment of Biological Sciences, Indian Institute of Science Education and Research (IISER) - Mohali, Manauli, India.
Purnima BhargavaCentre for Cellular and Molecular Biology (Council of Scientific and Industrial Research), Hyderabad, India. purnima@ccmb.res.in.
Council of Scientific and Industrial Research · INCentre for Cellular and Molecular Biology · INIndian Institute of Science Education and Research Mohali · INNational Institute of Immunology · INThe University of Texas Southwestern Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RNA polymerase (pol) III transcribes mostly short, house-keeping genes, which produce stable, non-coding RNAs. The tRNAs genes, highly transcribed by pol III in vivo are known replication fork barriers. One of the transcription factors, the PAF1C (RNA polymerase II associated factor 1 complex) is reported to associate with pol I and pol II and influence their transcription. We found low level PAF1C occupancy on the yeast pol III-transcribed genes, which is not correlated with nucleosome positions, pol III occupancy and transcription. PAF1C interacts with the pol III transcription complex and causes pol III loss from the genes under replication stress. Genotoxin exposure causes pol III but not Paf1 loss from the genes. In comparison, Paf1 deletion leads to increased occupancy of pol III, γ-H2A and DNA pol2 in gene-specific manner. Paf1 restricts the accumulation of pol III by influencing the pol III pause on the genes, which reduces the pol III barrier to the replication fork progression.

Indexed as

DNA DamageDNA ReplicationGene DeletionHistonesMethylationNuclear ProteinsRNA Polymerase IIIRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalTranscription, GeneticHistonesNuclear ProteinsPAF1 protein, S cerevisiaeRNA Polymerase IIIRNA, TransferSaccharomyces cerevisiae Proteins

Identifiers

PMID31501524
PMCPMC6733944
OpenAlexW2972202777

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.