Evidence map›Paper›PMID 31501259›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2019

IgM, IgG, and IgA Influenza-Specific Plasma Cells Express Divergent Transcriptomes.

Madeline J Price, Sakeenah L Hicks, John E Bradley, Troy D Randall, Jeremy M Boss, Christopher D Scharer

Open access · greenAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  13. Isotype-specific plasma cells express divergent transcriptional programs.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Madeline J PriceDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.ORCID 0000-0002-4947-7382
Sakeenah L HicksDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.
John E BradleyDivision of Clinical Immunology and Rheumatology, Department of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294; and.
Troy D RandallDivision of Clinical Immunology and Rheumatology, Department of Medicine, University of Alabama at Birmingham, Birmingham, AL 35294; and.ORCID 0000-0003-0643-0311
Jeremy M BossDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.ORCID 0000-0002-2432-1840
Christopher D ScharerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322; cdschar@emory.edu.ORCID 0000-0001-7716-8504
Emory University · USUniversity of Alabama at Birmingham · US

Funding

Regulation of Pathogenic Plasma Cells in Human SLEP01AI125180 · NIAID · EMORY UNIVERSITY · PI Ignacio E. Sanz · 2016 to 2026
$28.2M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
Role of B Cells in Murine Gammaherpesvirus-68 LatencyR01CA095318 · NCI · EMORY UNIVERSITY · PI SCHARER, CHRISTOPHER D · 2003 to 2019
$4.9M
A Model System for the Study of Human B-cell ToleranceR37AI049660 · NIAID · UNIVERSITY OF ROCHESTER · PI SANZ, IGNACIO E. · 2010 to 2019
$3.7M
Epigenetic Regulation of Plasma Cells DifferentiationR01AI123733 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 2016 to 2020
$1.9M
Epigenetic Regulation of Memory B Cell Differentiation and ReactivationF31AI138391 · NIAID · EMORY UNIVERSITY · PI PRICE, MADELINE JOAN · 2018 to 2019
$73k
NCI NIH HHS R01 CA095318NIAID NIH HHS F31 AI138391NIAID NIH HHS P01 AI125180NIAID NIH HHS R01 AI123733NIAID NIH HHS R37 AI049660NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Ab-secreting cells (ASC) or plasma cells are essential components of the humoral immune system. Although Abs of different isotypes have distinct functions, it is not known if the ASC that secrete each isotype are also distinct. ASC downregulate their surface BCR upon differentiation, hindering analyses that couple BCR information to other molecular characteristics. In this study, we developed a methodology using fixation, permeabilization, and intracellular staining coupled with cell sorting and reversal of the cross-links to allow RNA sequencing of isolated cell subsets. Using hemagglutinin and nucleoprotein Ag-specific B cell tetramers and intracellular staining for IgM, IgG, and IgA isotypes, we were able to derive and compare the gene expression programs of ASC subsets that were responding to the same Ags following influenza infection in mice. Intriguingly, whereas a shared ASC signature was identified, each ASC isotype-specific population expressed distinct transcriptional programs controlling cellular homing, metabolism, and potential effector functions. Additionally, we extracted and compared BCR clonotypes and found that each ASC isotype contained a unique, clonally related CDR3 repertoire. In summary, these data reveal specific complexities in the transcriptional programming of Ag-specific ASC populations.

Indexed as

TranscriptomeAnimalsComplementarity Determining RegionsHumansImmunoglobulin AImmunoglobulin GImmunoglobulin MInfluenza, HumanMiceMice, Inbred C57BLPlasma CellsTumor Cells, CulturedComplementarity Determining RegionsImmunoglobulin AImmunoglobulin GImmunoglobulin M

Identifiers

PMID31501259
PMCPMC6783370
OpenAlexW2972371030

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.