Evidence map›Paper›PMID 31500643›Full record

ArticleOrphanet journal of rare diseases2019

OPA1: 516 unique variants and 831 patients registered in an updated centralized Variome database.

Bastien Le Roux, Guy Lenaers, Xavier Zanlonghi, Patrizia Amati-Bonneau, Floris Chabrun, Thomas Foulonneau, Angélique Caignard, Stéphanie Leruez, Philippe Gohier, Vincent Procaccio and 4 more

Open access · goldAbstract read
In one paragraph

Article in Orphanet journal of rare diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
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  4. CRISPRa-Mediated Increase of OPA1 Expression in Dominant Optic Atrophy.International journal of molecular sciences · 2025
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  5. Article
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  7. Novel in vivo models of autosomal optic atrophy reveal conserved pathological changes in neuronal mitochondrial structure and function.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
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  8. Article
  9. Review
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  13. Review
  14. OPA1 Dominant Optic Atrophy: Pathogenesis and Therapeutic Targets.Journal of neuro-ophthalmology : the official journal of the North American Neuro-Ophthalmology Society · 2023
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  15. Article
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  17. Proceedings of the National Academy of Sciences of the United States of America · 2023
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  19. Current issues in molecular biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Bastien Le RouxDépartement d'Ophtalmologie, Centre Hospitalier Universitaire d'Angers, Angers, France.
Guy LenaersUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Xavier ZanlonghiCentre de Compétence Maladie Rare, Clinique Jules Verne, Nantes, France.
Patrizia Amati-BonneauUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Floris ChabrunUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Thomas FoulonneauUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Angélique CaignardDépartement d'Ophtalmologie, Centre Hospitalier Universitaire d'Angers, Angers, France.
Stéphanie LeruezDépartement d'Ophtalmologie, Centre Hospitalier Universitaire d'Angers, Angers, France.
Philippe GohierDépartement d'Ophtalmologie, Centre Hospitalier Universitaire d'Angers, Angers, France.
Vincent ProcaccioUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Dan MileaSingapore National Eye Center, Singapore Eye Research Institute, Duke-NUS, Singapore, Singapore.
Johan T den DunnenHuman Genetics and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Pascal ReynierUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France.
Marc FerréUnité Mixte de Recherche MITOVASC, CNRS 6015/INSERM 1083, Université d'Angers, Angers, France. marc.ferre@univ-angers.fr.ORCID 0000-0001-8265-7249
Centre National de la Recherche Scientifique · FRCentre Hospitalier Universitaire d'Angers · FRClinique Jules Verne · FRLeiden University Medical Center · NLSingapore National Eye Center · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe dysfunction of OPA1, a dynamin GTPase involved in mitochondrial fusion, is responsible for a large spectrum of neurological disorders, each of which includes optic neuropathy. The database dedicated to OPA1 ( https://www.lovd.nl/OPA1 ), created in 2005, has now evolved towards a centralized and more reliable database using the Global Variome shared Leiden Open-source Variation Database (LOVD) installation.

resultsThe updated OPA1 database, which registers all the patients from our center as well as those reported in the literature, now covers a total of 831 patients: 697 with isolated dominant optic atrophy (DOA), 47 with DOA "plus", and 83 with asymptomatic or unclassified DOA. It comprises 516 unique OPA1 variants, of which more than 80% (414) are considered pathogenic. Full clinical data for 118 patients are documented using the Human Phenotype Ontology, a standard vocabulary for referencing phenotypic abnormalities. Contributors may now make online submissions of phenotypes related to OPA1 mutations, giving clinical and molecular descriptions together with detailed ophthalmological and neurological data, according to an international thesaurus.

conclusionsThe evolution of the OPA1 database towards the LOVD, using unified nomenclature, should ensure its interoperability with other databases and prove useful for molecular diagnoses based on gene-panel sequencing, large-scale mutation statistics, and genotype-phenotype correlations.

Indexed as

Genetic Association StudiesGTP PhosphohydrolasesHumansMutationOptic Atrophy, Autosomal DominantPedigreePhenotypeGTP PhosphohydrolasesOPA1 protein, humanDatabaseDominant optic atrophyInteroperabilityNeurological disordersOPA1Sequence variant

Identifiers

PMID31500643
PMCPMC6734442
OpenAlexW2972504037

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.