Evidence map›Paper›PMID 31500575›Full record

ArticleBMC genomics2019

Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.

José S L Patané, Joaquim Martins, Luiz Thiberio Rangel, José Belasque, Luciano A Digiampietri, Agda Paula Facincani, Rafael Marini Ferreira, Fabrício José Jaciani, Yunzeng Zhang, Alessandro M Varani and 5 more

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Pathogens (Basel, Switzerland) · 2026
    Review
  2. Whole-Genome Analysis of a Historical Strain ofInternational journal of molecular sciences · 2026
    Article
  3. Microorganisms · 2026
    Article
  4. Article
  5. Genomic signatures of selection in drug metabolizing genes across cattle populations.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  6. Article
  7. Evolution and spread ofMicrobial genomics · 2025
    Article
  8. Article
  9. Article
  10. Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Article
  11. Article
  12. Article
  13. Genetic Divergence and Population Structure ofPlants (Basel, Switzerland) · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

José S L PatanéDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil.
Joaquim MartinsDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil.
Luiz Thiberio RangelDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil.
José BelasqueDepartamento de Fitopatologia e Nematologia, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, SP, Brazil.
Luciano A DigiampietriEscola de Artes, Ciências e Humanidades, Universidade de São Paulo, São Paulo, SP, Brazil.
Agda Paula FacincaniFaculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, SP, Brazil.
Rafael Marini FerreiraFaculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, SP, Brazil.
Fabrício José JacianiDepartamento de Pesquisa e Desenvolvimento, Fundo de Defesa da Citricultura (Fundecitrus), Araraquara, SP, Brazil.
Yunzeng ZhangCitrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, Lake Alfred, FL, USA.
Alessandro M VaraniFaculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, SP, Brazil.
Nalvo F AlmeidaFaculdade de Computação, Universidade Federal de Mato Grosso do Sul, Campo Grande, MS, Brazil.
Nian WangCitrus Research and Education Center, Department of Microbiology and Cell Science, University of Florida, Lake Alfred, FL, USA.
Jesus A FerroFaculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, SP, Brazil.
Leandro M MoreiraNúcleo de Pesquisas em Ciências Biológicas, Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
João C SetubalDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, SP, Brazil. setubal@iq.usp.br.ORCID http://orcid.org/0000-0001-9174-2816

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 304881/2015-5Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Finance Code 001
6 · The paper itself

Abstract

backgroundXanthomonas citri subsp. citri pathotypes cause bacterial citrus canker, being responsible for severe agricultural losses worldwide. The A pathotype has a broad host spectrum, while A* and A

resultsBased on a larger sampling of genomes than in previous studies (including six new genomes sequenced by our group, adding to a total of 95 genomes), phylogenomic analyses resulted in different resolutions, though overall indicating that A + A

conclusionsOur results provide novel insights into the evolutionary history of X. citri subsp. citri as well as a sound phylogenetic foundation for future evolutionary and genomic studies of its pathotypes.

Indexed as

Evolution, MolecularGenetic VariationGenomicsPhylogeographyXanthomonasBiogeographyDivergence datingGenome evolutionPhylogenomicsRecombination

Identifiers

PMID31500575
PMCPMC6734499

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.