Evidence map›Paper›PMID 31498865›Full record

ArticleJournal of experimental botany2019

Duplication history and molecular evolution of the rbcS multigene family in angiosperms.

Kana Yamada, Iakov I Davydov, Guillaume Besnard, Nicolas Salamin

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

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  5. Review
  6. A temporal gradient of cytonuclear coordination of chaperonins and chaperones during RuBisCo biogenesis in allopolyploid plants.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kana YamadaDepartment of Computational Biology, Génopode, University of Lausanne, Lausanne, Switzerland.
Iakov I DavydovDepartment of Computational Biology, Génopode, University of Lausanne, Lausanne, Switzerland.
Guillaume BesnardLaboratoire Evolution et Diversité Biologique (EDB UMR5174), CNRS-UPS-IRD, University of Toulouse III, Toulouse Cedex, France.
Nicolas SalaminDepartment of Computational Biology, Génopode, University of Lausanne, Lausanne, Switzerland.
University of Lausanne · CHCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is considered to be the main enzyme determining the rate of photosynthesis. The small subunit of the protein, encoded by the rbcS gene, has been shown to influence the catalytic efficiency, CO2 specificity, assembly, activity, and stability of RuBisCO. However, the evolution of the rbcS gene remains poorly studied. We inferred the phylogenetic tree of the rbcS gene in angiosperms using the nucleotide sequences and found that it is composed of two lineages that may have existed before the divergence of land plants. Although almost all species sampled carry at least one copy of lineage 1, genes of lineage 2 were lost in most angiosperm species. We found the specific residues that have undergone positive selection during the evolution of the rbcS gene. We detected intensive coevolution between each rbcS gene copy and the rbcL gene encoding the large subunit of RuBisCO. We tested the role played by each rbcS gene copy on the stability of the RuBisCO protein through homology modelling. Our results showed that this evolutionary constraint could limit the level of divergence seen in the rbcS gene, which leads to the similarity among the rbcS gene copies of lineage 1 within species.

Indexed as

Evolution, MolecularGene DuplicationMultigene FamilyCodonGene ConversionLikelihood FunctionsMagnoliopsidaModels, MolecularPhylogenyPlant ProteinsProtein StabilitySelection, GeneticSpinacia oleraceaThermodynamicsCodonPlant ProteinsCoevolutionduplicationgene copieshomology modellingmolecular evolutionmultigene familyphotosynthesispositive selectionrbcSRuBisCO

Identifiers

PMID31498865
PMCPMC6859733
OpenAlexW2972801811

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.