Evidence map›Paper›PMID 31498842›Full record

ArticlePloS one2019

The wing of the ToxR winged helix-turn-helix domain is required for DNA binding and activation of toxT and ompU.

Sarah J Morgan, Emily L French, Sarah C Plecha, Eric S Krukonis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Structures ofScience advances · 2026
    Article
  2. eLife · 2023
    Article
  3. ToxR activates theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Structural Insights into Regulation of Vibrio Virulence Gene Networks.Advances in experimental medicine and biology · 2023
    Article
  5. σMolecular microbiology · 2021
    Article
  6. Article
  7. Virulence Regulation and Innate Host Response in the Pathogenicity ofFrontiers in cellular and infection microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Sarah J MorganDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, United States of America.
Emily L FrenchDivision of Integrated Biomedical Sciences, University of Detroit Mercy School of Dentistry, Detroit, MI, United States of America.
Sarah C PlechaDivision of Integrated Biomedical Sciences, University of Detroit Mercy School of Dentistry, Detroit, MI, United States of America.
Eric S KrukonisDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, United States of America.ORCID 0000-0002-4400-3612
University of Detroit Mercy · USUniversity of Michigan · USWayne State University · US

Funding

Molecular Mechanisms of Microbial Pathogenesis Training ProgramT32AI007528 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 1998 to 2024
$6.8M
Regulation of Vibrio cholerae virulence by ToxR and TcpPR01AI075087 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KRUKONIS, ERIC S · 2007 to 2010
$1.2M
NIAID NIH HHS R01 AI075087NIAID NIH HHS T32 AI007528
6 · The paper itself

Abstract

ToxR and TcpP, two winged helix-turn-helix (w-HTH) family transcription factors, co-activate expression of the toxT promoter in Vibrio cholerae. ToxT then directly regulates a number of genes required for virulence. In addition to co-activation of toxT, ToxR can directly activate the ompU promoter and repress the ompT promoter. Based on a previous study suggesting that certain wing residues of ToxR are preferentially involved in toxT co-activation compared to direct ompU activation, we employed alanine-scanning mutagenesis to determine which residues in the wing of ToxR are required for activation of each promoter. All of the ToxR wing residues tested that were critical for transcriptional activation of toxT and/or ompU were also critical for DNA binding. While some ToxR wing mutants had reduced interaction with TcpP, that reduced interaction did not correlate with a specific defect in toxT activation. Rather, such mutants also affected ompU activation and DNA binding. Based on these findings we conclude that the primary role of the wing of ToxR is to bind DNA, along with the DNA recognition helix of ToxR, and this function is required both for direct activation of ompU and co-activation of toxT.

Indexed as

Helix-Turn-Helix MotifsAdhesins, BacterialBacterial ProteinsChromosomes, BacterialDNADNA-Binding ProteinsModels, MolecularMutationProtein BindingProtein DomainsTranscriptional ActivationTranscription FactorsAdhesins, BacterialBacterial ProteinsDNADNA-Binding ProteinsOmpU protein, Vibrio choleraetcpN protein, Vibrio choleraetoxR protein, Vibrio choleraeTranscription Factors

Identifiers

PMID31498842
PMCPMC6733452
OpenAlexW2972667725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.