Evidence map›Paper›PMID 31498448›Full record

ArticleJournal of medical virology2020

Genetic and antigenic characteristics of a human influenza C virus clinical isolate.

Runxia Liu, Zizhang Sheng, Tao Lin, Chithra Sreenivasan, Rongruan Gao, Milton Thomas, Julian Druce, Ben M Hause, Radhey S Kaushik, Feng Li and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medical virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
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  3. Review
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  5. Influenza D virus utilizes both 9-Journal of virology · 2024
    Article
  6. Article
  7. Influenza D virus.Current opinion in virology · 2020
    Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Runxia LiuDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
Zizhang ShengDepartment of Biochemistry and Molecular Biophysics, Department of Systems Biology, Columbia University, New York, New York.
Tao LinDepartment of Chemistry and Biochemistry, South Dakota State University, Brookings, South Dakota.
Chithra SreenivasanDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
Rongruan GaoDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
Milton ThomasDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
Julian DruceVirology Section, Victorian Infectious Diseases Reference Laboratory, Melbourne, Victoria, Australia.
Ben M HauseResearch and Development Division, Cambridge Technologies Inc, Worthington, Minnesota.
Radhey S KaushikDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
Feng LiDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.ORCID 0000-0002-8904-2893
Dan WangDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota.
South Dakota State University · USColumbia University · USVictorian Infectious Diseases Reference Laboratory · AU

Funding

Influenza D Virus Entry and Tissue TropismR01AI141889 · NIAID · UNIVERSITY OF KENTUCKY · PI LI, FENG · 2018 to 2022
$2.6M
NIAID NIH HHS R01 AI141889
6 · The paper itself

Abstract

Unlike influenza A and B viruses that infect humans and cause severe diseases in seasonal epidemics, influenza C virus (ICV) is a ubiquitous childhood pathogen typically causing mild respiratory symptoms. ICV infections are rarely diagnosed and less research has been performed on it despite the virus being capable of causing severe disease in infants. Here we report on the isolation of a human ICV from a child with acute respiratory disease, provisionally designated C/Victoria/2/2012 (C/Vic). The full-length genome sequence and phylogenetic analysis revealed that the hemagglutinin-esterase-fusion (HEF) gene of C/Vic was derived from C/Sao Paulo lineage, while its PB2 and P3 genes evolved separately from all characterized historical ICV isolates. Furthermore, antigenic analysis using the hemagglutination inhibition (HI) assay found that 1947 C/Taylor virus (C/Taylor lineage) was antigenically more divergent from1966 C/Johannesburg (C/Aichi lineage) than from 2012 C/Vic. Structure modeling of the HEF protein identified two mutations in the 170-loop of the HEF protein around the receptor-binding pocket as a possible antigenic determinant responsible for the discrepant HI results. Taken together, results of our studies reveal novel insights into the genetic and antigenic evolution of ICV and provide a framework for further investigation of its molecular determinants of antigenic property and replication.

Indexed as

AnimalsAntigens, ViralChildDogsGammainfluenzavirusGene Expression Regulation, ViralGenome, ViralHumansInfluenza, HumanMadin Darby Canine Kidney CellsModels, MolecularPhylogenyProtein ConformationRNA, ViralViral ProteinsAntigens, ViralRNA, ViralViral Proteinsantigenic evolutiongenesisinfluenza C virusphylogenetic evolution

Identifiers

PMID31498448
PMCPMC6901781
OpenAlexW2972343736

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.