Evidence map›Paper›PMID 31497844›Full record

ArticleRheumatology (Oxford, England)2020

Unique Sjögren's syndrome patient subsets defined by molecular features.

Judith A James, Joel M Guthridge, Hua Chen, Rufei Lu, Rebecka L Bourn, Krista Bean, Melissa E Munroe, Miles Smith, Eliza Chakravarty, Alan N Baer and 17 more

Open access · greenAbstract read
In one paragraph

Article in Rheumatology (Oxford, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 3 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 3 syntheses or guidelines pooled it, 60 citations in OpenAlex.

  1. Pooled it
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  10. Insights into Patient Heterogeneity in Sjögren's Disease.International journal of molecular sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 15 institutions in 1 country.

Judith A JamesArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Joel M GuthridgeArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Hua ChenArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Rufei LuArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Rebecka L BournArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Krista BeanArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Melissa E MunroeArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Miles SmithArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Eliza ChakravartyArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Alan N BaerDivision of Rheumatology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Ghaith NoaisehDivision of Rheumatology and Clinical Immunology, Department of Medicine, University of Pittsburgh Medical Center, Pittsburgh, PA, USA.
Ann ParkeDivision of Rheumatic Diseases, University of Connecticut, Farmington, CT, USA.
Karen BoyleRho Federal Systems Division, Chapel Hill, NC, USA.
Lynette Keyes-ElsteinRho Federal Systems Division, Chapel Hill, NC, USA.
Andreea CocaDepartment of Medicine, University of Rochester Medical Center, Rochester, NY, USA.
Tammy UtsetDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Mark C GenoveseImmunology and Rheumatology, Stanford University School of Medicine, Stanford, CA, USA.
Virginia PascualDrukier Institute for Children's Health, Weill Cornell Medicine, New York, NY, USA.
Paul J UtzImmunology and Rheumatology, Stanford University School of Medicine, Stanford, CA, USA.
V Michael HolersDivision of Rheumatology, University of Colorado School of Medicine, Aurora,CO, USA.
Kevin D DeaneDivision of Rheumatology, University of Colorado School of Medicine, Aurora,CO, USA.
Kathy L SivilsArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Teresa AberleArthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Daniel J WallaceDepartment of Medicine, Cedars-Sinai Medical Center, West Hollywood, CA, USA.
James McNamaraDivision of Allergy, Immunology, and Transplantation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Nathalie FranchimontBiogen, Cambridge, MA, USA.
E William St ClairDivision of Rheumatology and Immunology, Department of Medicine, Duke University School of Medicine, Durham, NC, USA.
Oklahoma Medical Research Foundation · USRho (United States) · USStanford University · USUniversity of Colorado Denver · USBiogen (United States) · USCedars-Sinai Medical Center · USDuke University · USJohns Hopkins University · USNational Institutes of Health · USUniversity of Chicago · USUniversity of Connecticut · USUniversity of Oklahoma Health Sciences Center · USUniversity of Pittsburgh Medical Center · USUniversity of Rochester Medical Center · USWeill Cornell Medicine · US

Funding

Transplantation GroupUM2AI117870 · NIAID · RHO FEDERAL SYSTEMS DIVISION, INC. · PI DAVID, GLORIA · 2015 to 2023
$208.1M
Tracking and Evaluation CoreU54GM104938 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI PAUL G SPICER · 2013 to 2026
$68.2M
Supplement - Inflammatory Triggers in B Cell AutoimmunityU19AI056363 · NIAID · DUKE UNIVERSITY · PI ST. CLAIR, EUGENE WILLIAM · 2003 to 2017
$35.3M
Oklahoma Rheumatic Disease Research Cores Center (Overall Application)P30AR073750 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JUDITH A JAMES · 2018 to 2026
$8.5M
SNP Confirmation and High Throughput Genotyping CoreP30AR053483 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN · 2007 to 2017
$6.7M
Scientific CoreU19AI082715 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI PASCUAL, MARIA VIRGINIA · 2009 to 2018
$6.4M
Pre-Clinical Studies to Identify SLE Therapeutic TargetsU19AI082714 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2009 to 2018
$6.2M
Science in a Culture of MentoringP30GM103510 · NIGMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JAMES, JUDITH A · 2012 to 2016
$3.9M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH · 2014 to 2018
$3.6M
Mechanisms in Sjogrens SyndromeR01DE012354 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI ROSEN, ANTONY · 1998 to 2017
$3.4M
Oklahoma ACE: Molecular Destruction of Autoimmune Disease to Aid Clinical Trail SuccessUM1AI144292 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JUDITH A JAMES · 2019 to 2026
$3.3M
Understanding early events in lupus autoimmunity to aid preventionU01AI101934 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JAMES, JUDITH A · 2012 to 2016
$2.3M
NIAID NIH HHS HHSN272200900057CNIAID NIH HHS U01 AI101934NIAID NIH HHS U19 AI056363NIAID NIH HHS U19 AI082714NIAID NIH HHS U19 AI082715NIAID NIH HHS U19 AI110491NIAID NIH HHS UM1 AI110503NIAID NIH HHS UM1 AI144292NIAID NIH HHS UM2 AI117870NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30 AR073750NIDCR NIH HHS R01 DE012354NIGMS NIH HHS P30 GM103510NIGMS NIH HHS U54 GM104938
6 · The paper itself

Abstract

objectiveTo address heterogeneity complicating primary SS (pSS) clinical trials, research and care by characterizing and clustering patients by their molecular phenotypes.

methodspSS patients met American-European Consensus Group classification criteria and had at least one systemic manifestation and stimulated salivary flow of ⩾0.1 ml/min. Correlated transcriptional modules were derived from gene expression microarray data from blood (n = 47 with appropriate samples). Patients were clustered based on this molecular information using an unbiased random forest modelling approach. In addition, multiplex, bead-based assays and ELISAs were used to assess 30 serum cytokines, chemokines and soluble receptors. Eleven autoantibodies, including anti-Ro/SSA and anti-La/SSB, were measured by Bio-Rad Bioplex 2200.

resultsTranscriptional modules distinguished three clusters of pSS patients. Cluster 1 showed no significant elevation of IFN or inflammation modules. Cluster 2 showed strong IFN and inflammation modular network signatures, as well as high plasma protein levels of IP-10/CXCL10, MIG/CXCL9, BLyS (BAFF) and LIGHT. Cluster 3 samples exhibited moderately elevated IFN modules, but with suppressed inflammatory modules, increased IP-10/CXCL10 and B cell-attracting chemokine 1/CXCL13 and trends toward increased MIG/CXCL9, IL-1α, and IL-21. Anti-Ro/SSA and anti-La/SSB were present in all three clusters.

conclusionMolecular profiles encompassing IFN, inflammation and other signatures can be used to separate patients with pSS into distinct clusters. In the future, such profiles may inform patient selection for clinical trials and guide treatment decisions.

Indexed as

Gene ExpressionAdultAntibodies, AntinuclearAutoantibodiesB-Cell Activating FactorChemokine CXCL10Chemokine CXCL13Chemokine CXCL9CytokinesEnzyme-Linked Immunosorbent AssayFemaleGene Regulatory NetworksHumansInflammationInterferonsInterleukin-1alphaAntibodies, AntinuclearAutoantibodiesB-Cell Activating FactorChemokine CXCL10Chemokine CXCL13Chemokine CXCL9CXCL10 protein, humanCXCL13 protein, humanCXCL9 protein, humanCytokinesIL1A protein, humanInterferonsInterleukin-1alphaInterleukin-21InterleukinsSS-A antibodiesSS-B antibodiesTNFSF13B protein, humanTNFSF14 protein, humanTumor Necrosis Factor Ligand Superfamily Member 14biomarkersinterferonprecision medicineSjögren’s syndrome

Identifiers

PMID31497844
PMCPMC7188221
OpenAlexW2973064061

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.