Evidence map›Paper›PMID 31497017›Full record

ArticleFrontiers in immunology2019

A Novel Splice Site Mutation in

Aravind K Bandari, Babylakshmi Muthusamy, Sunil Bhat, Periyasamy Govindaraj, Pavithra Rajagopalan, Aparna Dalvi, Siddharth Shankar, Remya Raja, Kavita S Reddy, Manisha Madkaikar and 1 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Aravind K BandariInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Babylakshmi MuthusamyInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Sunil BhatPediatric Haematology, Oncology and Blood & Bone Marrow Transplantation, Mazumdar-Shaw Cancer Center, Narayana Health City, Bangalore, India.
Periyasamy GovindarajNeuromuscular Laboratory, Department of Neuropathology, National Institute of Mental Health and Neurosciences, Bangalore, India.
Pavithra RajagopalanInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Aparna DalviNational Institute of Immunohaematology, KEM Hospital Campus, Mumbai, India.
Siddharth ShankarCenter for Molecular Medicine, National Institute of Mental Health and Neurosciences, Bangalore, India.
Remya RajaInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Kavita S ReddyInstitute of Bioinformatics, International Technology Park, Bangalore, India.
Manisha MadkaikarNational Institute of Immunohaematology, KEM Hospital Campus, Mumbai, India.
Akhilesh PandeyCenter for Molecular Medicine, National Institute of Mental Health and Neurosciences, Bangalore, India.
National Institute of Mental Health and Neurosciences · INInstitute of Bioinformatics · INNational Institute of Immunohaematology · INNarayana Health · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

Primary immunodeficiency (PID) refers to a group of heterogeneous genetic disorders with a weakened immune system. Mendelian susceptibility to mycobacterial disease (MSMD) is a subset of PID in which patients exhibit defects in intrinsic and innate immunity. It is a rare congenital disorder characterized by severe and recurrent infections caused by weakly virulent mycobacteria or other environmental mycobacteria. Any delay in definitive diagnosis poses a major concern due to the confounding nature of infections and immune deficiencies. Here, we report the clinical, immunological, and genetic characteristics of two siblings (infants) with recurrent infections. There was a history of death of two other siblings in the family after BCG vaccination. Whole exome sequencing of the two affected surviving infants along with their consanguineous parents identified a novel, homozygous single nucleotide splice acceptor site variant in intron 2 of the interferon gamma receptor 2 (

Indexed as

Genetic Predisposition to DiseaseHumansImmunologic Deficiency SyndromesInfantMaleMutationMycobacterium InfectionsReceptors, InterferonRNA Splice SitesIFNGR2 protein, humanReceptors, InterferonRNA Splice Sitesgene therapyIFN gamma signalingIFNGR2 deficiencyimmunodeficiencyinfectionnon-tuberculous mycobacteria

Identifiers

PMID31497017
PMCPMC6712061
OpenAlexW2966818930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.