Evidence map›Paper›PMID 31495563›Full record

ArticleMolecular cell2019

Transcriptional Responses to IFN-γ Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions.

Iris Steinparzer, Vitaly Sedlyarov, Jonathan D Rubin, Kevin Eislmayr, Matthew D Galbraith, Cecilia B Levandowski, Terezia Vcelkova, Lucy Sneezum, Florian Wascher, Fabian Amman and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Iris SteinparzerMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Vitaly SedlyarovCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Jonathan D RubinDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Kevin EislmayrMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Matthew D GalbraithLinda Crnic Institute for Down Syndrome, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Department of Pharmacology, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Cecilia B LevandowskiDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA.
Terezia VcelkovaMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Lucy SneezumMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Florian WascherMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Fabian AmmanMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria; Department of Theoretical Chemistry of the University of Vienna, 1090 Vienna, Austria.
Renata KleinovaMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria.
Heather BenderDepartment of Pharmacology, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Zdenek AndrysikDepartment of Pharmacology, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Joaquin M EspinosaLinda Crnic Institute for Down Syndrome, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Department of Pharmacology, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Giulio Superti-FurgaCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria; Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria.
Robin D DowellBioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA; Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80309, USA.
Dylan J TaatjesDepartment of Biochemistry, University of Colorado, Boulder, CO 80303, USA. Electronic address: taatjes@colorado.edu.
Pavel KovarikMax Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Dr. Bohr-Gasse 9, Vienna, Austria. Electronic address: pavel.kovarik@univie.ac.at.
University of Vienna · ATUniversity of Colorado Anschutz Medical Campus · USUniversity of Colorado Boulder · USAustrian Academy of Sciences · AT

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Stress- and Promoter-Specific Mechanisms of Transcritpional Activation by p53R01CA117907 · NCI · UNIVERSITY OF COLORADO DENVER · PI ESPINOSA, JOAQUIN M. · 2006 to 2022
$4.4M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Understanding Down Syndrome as an InterferonopathyR01AI150305 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ESPINOSA, JOAQUIN M. · 2019 to 2020
$3.5M
A High-memory Supercomputer for Proteomics, Text Mining and Microbiome ResearchS10OD012300 · OD · UNIVERSITY OF COLORADO · PI AHN, NATALIE G. · 2013 to 2013
$1.9M
Mediator Kinases and Transcription RegulationR01GM117370 · NIGMS · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2016 to 2019
$1.5M
Mechanisms of gene expression control during the cellular response to hypoxiaR01GM120109 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI ESPINOSA, JOAQUIN M. · 2016 to 2019
$1.2M
Austrian Science Fund FWF P 31848Austrian Science Fund FWF W 1261NCI NIH HHS R01 CA117907NIAID NIH HHS R01 AI150305NIGMS NIH HHS R01 GM117370NIGMS NIH HHS R01 GM120109NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607NIH HHS S10 OD012300
6 · The paper itself

Abstract

Transcriptional responses to external stimuli remain poorly understood. Using global nuclear run-on followed by sequencing (GRO-seq) and precision nuclear run-on sequencing (PRO-seq), we show that CDK8 kinase activity promotes RNA polymerase II pause release in response to interferon-γ (IFN-γ), a universal cytokine involved in immunity and tumor surveillance. The Mediator kinase module contains CDK8 or CDK19, which are presumed to be functionally redundant. We implemented cortistatin A, chemical genetics, transcriptomics, and other methods to decouple their function while assessing enzymatic versus structural roles. Unexpectedly, CDK8 and CDK19 regulated different gene sets via distinct mechanisms. CDK8-dependent regulation required its kinase activity, whereas CDK19 governed IFN-γ responses through its scaffolding function (i.e., it was kinase independent). Accordingly, CDK8, not CDK19, phosphorylates the STAT1 transcription factor (TF) during IFN-γ stimulation, and CDK8 kinase inhibition blocked activation of JAK-STAT pathway TFs. Cytokines such as IFN-γ rapidly mobilize TFs to "reprogram" cellular transcription; our results implicate CDK8 and CDK19 as essential for this transcriptional reprogramming.

Indexed as

AnimalsCyclin-Dependent Kinase 8Cyclin-Dependent KinasesFibroblastsHCT116 CellsHost-Pathogen InteractionsHumansInterferon-gammaMiceMice, Inbred C57BLMice, KnockoutPhosphorylationRNA Polymerase IISignal TransductionSTAT1 Transcription FactorTranscription, GeneticCDK19 protein, humanCDK19 protein, mouseCDK8 protein, humanCdk8 protein, mouseCyclin-Dependent Kinase 8Cyclin-Dependent KinasesIFNG protein, humanIFNG protein, mouseInterferon-gammaRNA Polymerase IISTAT1 protein, humanStat1 protein, mouseSTAT1 Transcription FactorCDK19CDK8cortistatin AeRNAinterferonMediator kinasepromoter-proximal pausingRNA polymerase IISTAT1transcription

Identifiers

PMID31495563
PMCPMC6842433
OpenAlexW2972129450

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.