Evidence map›Paper›PMID 31495062›Full record

ArticleThe FEBS journal2019

Arginine methylation augments Sbp1 function in translation repression and decapping.

Nupur Bhatter, Raju Roy, Shanaya Shah, Sneha P Sastry, Sabnam Parbin, Rajan Iyappan, Siddharth Kankaria, Purusharth I Rajyaguru

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. An NMR-Based Approach for Global Arginine Methylation Analysis.Methods in molecular biology (Clifton, N.J.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Nupur BhatterDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.
Raju RoyDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.
Shanaya ShahUniversity of California, Davis, CA, USA.
Sneha P SastryDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.
Sabnam ParbinDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.
Rajan IyappanIAPG Academy of Science, Libechov, Czech Republic.
Siddharth KankariaDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.
Purusharth I RajyaguruDepartment of Biochemistry, Indian Institute of Science, Bangalore, India.ORCID 0000-0003-3794-418X
Indian Institute of Science Bangalore · INCzech Academy of Sciences, Institute of Animal Physiology and Genetics · CZUniversity of California, Davis · US

Funding

DBT-Wellcome Trust India Alliance IA/I/12/2/500625Department of Biotechnology, India BT/PR13267/BRB/10/1444/2015Wellcome DBT India Alliance IA/I/12/2/500625Wellcome Trust
6 · The paper itself

Abstract

The fate of messenger RNA in cytoplasm plays a crucial role in various cellular processes. However, the mechanisms that decide whether mRNA will be translated, degraded or stored remain unclear. Single stranded nucleic acid binding protein (Sbp1), an Arginine-Glycine-Glycine (RGG-motif) protein, is known to promote transition of mRNA into a repressed state by binding eukaryotic translation initiation factor 4G1 (eIF4G1) and to promote mRNA decapping, perhaps by modulation of Dcp1/2 activity. Sbp1 is known to be methylated on arginine residues in RGG-motif; however, the functional relevance of this modification in vivo remains unknown. Here, we report that Sbp1 is arginine-methylated in an hnRNP methyl transferase (Hmt1)-dependent manner and that methylation is enhanced upon glucose deprivation. Characterization of an arginine-methylation-defective (AMD) mutant provided evidence that methylation affects Sbp1 function in vivo. The AMD mutant is compromised in causing growth defect upon overexpression, and the mutant is defective in both localizing to and inducing granule formation. Importantly, the Sbp1-eIF4G1 interaction is compromised both for the AMD mutant and in the absence of Hmt1. Upon overexpression, wild-type Sbp1 increases localization of another RGG motif containing protein, Scd6 (suppressor of clathrin deficiency) to granules; however, this property of Sbp1 is compromised in the AMD mutant and in the absence of Hmt1, indicating that Sbp1 repression activity could involve other RGG-motif translation repressors. Additionally, the AMD mutant fails to increase localization of the decapping activator DEAD box helicase homolog to foci and fails to rescue the decapping defect of a dcp1-2Δski8 strain, highlighting the role of Sbp1 methylation in decapping. Taken together, these results suggest that arginine methylation modulates Sbp1 role in mRNA fate determination.

Indexed as

Amino Acid MotifsAmino Acid SequenceArginineBlotting, WesternCircular DichroismCytoplasmic GranulesMethylationProtein BindingProtein Processing, Post-TranslationalRNA, MessengerSaccharomyces cerevisiae ProteinsSelenium-Binding ProteinsArginineRNA, MessengerSaccharomyces cerevisiae ProteinsSelenium-Binding ProteinsdecappingeIF4GRGG-motif proteinsRNA granulesSbp1translation repression

Identifiers

PMID31495062
PMCPMC6916386
OpenAlexW2973117184

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.