Evidence map›Paper›PMID 31493651›Full record

ArticleVirology2019

Structural characterization and biological function of bivalent binding of CD2AP to intrinsically disordered domain of chikungunya virus nsP3 protein.

Peter Agback, Francisco Dominguez, Yulia Pustovalova, Tetyana Lukash, Nikita Shiliaev, Vladislav Yu Orekhov, Ilya Frolov, Tatiana Agback, Elena I Frolova

Open access · hybridAbstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
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  4. Biomolecular NMR assignments · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Peter AgbackDepartment of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden. Electronic address: peter.agback@slu.se.
Francisco DominguezDepartment of Microbiology, University of Alabama at Birmingham, AL, USA.
Yulia PustovalovaDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Tetyana LukashDepartment of Microbiology, University of Alabama at Birmingham, AL, USA.
Nikita ShiliaevDepartment of Microbiology, University of Alabama at Birmingham, AL, USA.
Vladislav Yu OrekhovDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Ilya FrolovDepartment of Microbiology, University of Alabama at Birmingham, AL, USA.
Tatiana AgbackDepartment of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Elena I FrolovaDepartment of Microbiology, University of Alabama at Birmingham, AL, USA. Electronic address: efrolova@uab.edu.
University of Alabama at Birmingham · USSwedish University of Agricultural Sciences · SEUniversity of Gothenburg · SE

Funding

Mechanistic role of ns2 protein in evasion of innate immune response by alphavirusesR01AI133159 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOVA, ELENA I · 2017 to 2021
$3.0M
Alphavirus nsP3 protein: roles of intrinsically disordered region in virus replication and pathogenesisR01AI118867 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOVA, ELENA I · 2015 to 2019
$1.8M
Mechanistic understanding of SH3 domain-containing protein function in alphavirus replicationR21AI146969 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2019 to 2020
$401k
NIAID NIH HHS R01 AI118867NIAID NIH HHS R01 AI133159NIAID NIH HHS R21 AI146969
6 · The paper itself

Abstract

Alphavirus nsP3 proteins contain long, intrinsically disordered, hypervariable domains, HVD, which serve as hubs for interaction with many cellular proteins. Here, we have deciphered the mechanism and function of HVD interaction with host factors in alphavirus replication. Using NMR spectroscopy, we show that CHIKV HVD contains two SH3 domain-binding sites. Using an innovative chemical shift perturbation signature approach, we demonstrate that CD2AP interaction with HVD is mediated by its SH3-A and SH3-C domains, and this leaves the SH3-B domain available for interaction with other cellular factor(s). This cooperative interaction with two SH3 domains increases binding affinity to CD2AP and possibly induces long-range allosteric effects in HVD. Our data demonstrate that BIN1, CD2AP and SH3KBP1 play redundant roles in initiation of CHIKV replication. Point mutations in both CHIKV HVD binding sites abolish its interaction with all three proteins, CD2AP, BIN1 and SH3KBP1. This results in strong inhibition of viral replication initiation.

Indexed as

Host-Pathogen InteractionsVirus ReplicationAdaptor Proteins, Signal TransducingBinding SitesCells, CulturedChikungunya virusCytoskeletal ProteinsFibroblastsHumansMagnetic Resonance SpectroscopyNuclear ProteinsProtein BindingProtein Interaction MappingTumor Suppressor ProteinsViral Nonstructural ProteinsAdaptor Proteins, Signal TransducingBIN1 protein, humanCD2-associated proteinCytoskeletal Proteinsnsp3 protein, alphavirusNuclear ProteinsSH3KBP1 protein, humanTumor Suppressor ProteinsViral Nonstructural ProteinsAlphavirusesBIN1CD2APChikungunya virusIntrinsically disordered proteinsNMRnsP3SH3 domain-containing proteinsSH3KBP1Viral replication

Identifiers

PMID31493651
PMCPMC7144582
OpenAlexW2969350696

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.