Evidence map›Paper›PMID 31492745›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2019

LSD1 Cooperates with Noncanonical NF-κB Signaling to Regulate Marginal Zone B Cell Development.

Robert R Haines, Christopher D Scharer, Jenna L Lobby, Jeremy M Boss

Open access · greenAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. H3K27me3 Demethylase UTX Restrains Plasma Cell Formation.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  10. Article
  11. Epigenetic gene regulation in plasma cells.Immunological reviews · 2021
    Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Robert R HainesDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.ORCID 0000-0001-9574-4341
Christopher D ScharerDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.ORCID 0000-0001-7716-8504
Jenna L LobbyDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322.ORCID 0000-0002-1395-2583
Jeremy M BossDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA 30322 jmboss@emory.edu.ORCID 0000-0002-2432-1840
Emory University · US

Funding

Regulation of Pathogenic Plasma Cells in Human SLEP01AI125180 · NIAID · EMORY UNIVERSITY · PI Ignacio E. Sanz · 2016 to 2026
$28.2M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
A Model System for the Study of Human B-cell ToleranceR37AI049660 · NIAID · UNIVERSITY OF ROCHESTER · PI SANZ, IGNACIO E. · 2010 to 2019
$3.7M
Epigenetic Regulation of Plasma Cells DifferentiationR01AI123733 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 2016 to 2020
$1.9M
Epigenetic Programming of B cell Terminal DifferentiationF31AI112261 · NIAID · EMORY UNIVERSITY · PI BARWICK, BENJAMIN GABRIEL · 2014 to 2016
$120k
The role of LSD1 in the epigenetic regulation of B cell terminal differentiationF31AI131532 · NIAID · EMORY UNIVERSITY · PI HAINES, ROBERT RICHARD · 2017 to 2019
$107k
NIAID NIH HHS F31 AI112261NIAID NIH HHS F31 AI131532NIAID NIH HHS P01 AI125180NIAID NIH HHS R01 AI123733NIAID NIH HHS R37 AI049660NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Marginal zone B cells (MZB) are a mature B cell subset that rapidly respond to blood-borne pathogens. Although the transcriptional changes that occur throughout MZB development are known, the corresponding epigenetic changes and epigenetic modifying proteins that facilitate these changes are poorly understood. The histone demethylase LSD1 is an epigenetic modifier that promotes plasmablast formation, but its role in B cell development has not been explored. In this study, a role for LSD1 in the development of B cell subsets was examined. B cell-conditional deletion of LSD1 in mice resulted in a decrease in MZB whereas follicular B cells and bone marrow B cell populations were minimally affected. LSD1 repressed genes in MZB that were normally upregulated in the myeloid and follicular B cell lineages. Correspondingly, LSD1 regulated chromatin accessibility at the motifs of transcription factors known to regulate splenic B cell development, including NF-κB motifs. The importance of NF-κB signaling was examined through an ex vivo MZB development assay, which showed that both LSD1-deficient and NF-κB-inhibited transitional B cells failed to undergo full MZB development. Gene expression and chromatin accessibility analyses of in vivo- and ex vivo-generated LSD1-deficient MZB indicated that LSD1 regulated the downstream target genes of noncanonical NF-κB signaling. Additionally LSD1 was found to interact with the noncanonical NF-κB transcription factor p52. Together, these data reveal that the epigenetic modulation of the noncanonical NF-κB signaling pathway by LSD1 is an essential process during the development of MZB.

Indexed as

AnimalsB-Lymphocyte SubsetsEpigenesis, GeneticHistone DemethylasesMiceMice, KnockoutNF-kappa B p52 SubunitSignal TransductionHistone DemethylasesKDM1a protein, mouseNF-kappa B p52 Subunit

Identifiers

PMID31492745
PMCPMC6761012
OpenAlexW2972088249

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.