Evidence map›Paper›PMID 31492669›Full record

ArticleApplied and environmental microbiology2019

Potential Interactions between Clade SUP05 Sulfur-Oxidizing Bacteria and Phages in Hydrothermal Vent Sponges.

Kun Zhou, Rui Zhang, Jin Sun, Weipeng Zhang, Ren-Mao Tian, Chong Chen, Shinsuke Kawagucci, Ying Xu

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

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  3. V- and VNature communications · 2026
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  18. Stability of the Microbiome of the SpongeFrontiers in microbiology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Kun Zhou *Shenzhen University-HKUST Joint Marine Science PhD Program, Shenzhen University, Shenzhen, People's Republic of China.
Rui Zhang *State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, China.
Jin SunDepartment of Ocean Science, Division of Life Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong.
Weipeng ZhangDepartment of Ocean Science, Division of Life Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong.
Ren-Mao TianDepartment of Ocean Science, Division of Life Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong.
Chong ChenX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.ORCID 0000-0002-5035-4021
Shinsuke KawagucciX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Ying XuShenzhen University-HKUST Joint Marine Science PhD Program, Shenzhen University, Shenzhen, People's Republic of China boxuying@szu.edu.cn.
Hong Kong University of Science and Technology · HKJapan Agency for Marine-Earth Science and Technology · JPShenzhen University · CNXiamen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In deep-sea hydrothermal vent environments, sulfur-oxidizing bacteria belonging to the clade SUP05 are crucial symbionts of invertebrate animals. Marine viruses, as the most abundant biological entities in the ocean, play essential roles in regulating the sulfur metabolism of the SUP05 bacteria. To date, vent sponge-associated SUP05 and their phages have not been well documented. The current study analyzed microbiomes of Haplosclerida sponges from hydrothermal vents in the Okinawa Trough and recovered the dominant SUP05 genome, designated VS-SUP05. Phylogenetic analysis showed that VS-SUP05 was closely related to endosymbiotic SUP05 strains from mussels living in deep-sea hydrothermal vent fields. Homology and metabolic pathway comparisons against free-living and symbiotic SUP05 strains revealed that the VS-SUP05 genome shared many features with the deep-sea mussel symbionts. Supporting a potentially symbiotic lifestyle, the VS-SUP05 genome contained genes involved in the synthesis of essential amino acids and cofactors that are desired by the host. Analysis of sponge-associated viral sequences revealed putative VS-SUP05 phages, all of which were double-stranded viruses belonging to the families

Indexed as

Hydrothermal VentsSymbiosisAnimalsBacteriophagesGenome, BacterialMetabolic Networks and PathwaysMetagenomicsMicrobiotaOxidation-ReductionPhylogenyPoriferaRNA, Ribosomal, 16SSulfurSulfur-Reducing BacteriaRNA, Ribosomal, 16SSulfurdeep seahydrothermal ventmarine phagesspongeSUP05 bacteria

Identifiers

PMID31492669
PMCPMC6821954
OpenAlexW2971895170

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.