Evidence map›Paper›PMID 31492012›Full record

ArticleMolecules (Basel, Switzerland)2019

Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR-FTIR Spectroscopy.

Lorenza Ferro, Zivan Gojkovic, András Gorzsás, Christiane Funk

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  15. Green Extracellular Synthesis of Silver Nanoparticles byMolecules (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lorenza FerroDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden. lorenza.ferro@gmail.com.ORCID 0000-0002-9481-8537
Zivan GojkovicDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden. gojkoviczivan@gmail.com.
András GorzsásDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden. andras.gorzsas@umu.se.ORCID 0000-0002-2298-8844
Christiane FunkDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden. Christiane.Funk@umu.se.

Funding

Energimyndigheten 2018-017772NordForsk 82845Vinnova 2017-03301
6 · The paper itself

Abstract

Attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy is a simple, cheap, and fast method to collect chemical compositional information from microalgae. However, (semi)quantitative evaluation of the collected data can be daunting. In this work, ATR-FTIR spectroscopy was used to monitor changes of protein, lipid, and carbohydrate content in seven green microalgae grown under nitrogen starvation. Three statistical methods-univariate linear regression analysis (ULRA), orthogonal partial least squares (OPLS), and multivariate curve resolution-alternating least squares (MCR-ALS)-were compared in their ability to model and predict the concentration of these compounds in the biomass. OPLS was found superior, since it i) included all three compounds simultaneously; ii) explained variations in the data very well; iii) had excellent prediction accuracy for proteins and lipids, and acceptable for carbohydrates; and iv) was able to discriminate samples based on cultivation stage and type of storage compounds accumulated in the cells. ULRA models worked well for the determination of proteins and lipids, but carbohydrates could only be estimated if already determined protein contents were used for scaling. Results obtained by MCR-ALS were similar to ULRA, however, this method is considerably easier to perform and interpret than the more abstract statistical/chemometric methods. FTIR-spectroscopy-based models allow high-throughput, cost-effective, and rapid estimation of biomass composition of green microalgae.

Indexed as

MetabolomeMetabolomicsProteomeProteomicsBiomassCarbohydrate MetabolismLipid MetabolismMicroalgaeSpectroscopy, Fourier Transform InfraredProteomecarbohydratesFTIR spectroscopylipidsmicroalgaenitrogen starvationproteinsstatistical methods

Identifiers

PMID31492012
PMCPMC6767194

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.