Evidence map›Paper›PMID 31490923›Full record

ArticlePLoS biology2019

Conservation and divergence of protein pathways in the vertebrate heart.

Joel D Federspiel, Panna Tandon, Caralynn M Wilczewski, Lauren Wasson, Laura E Herring, Samvida S Venkatesh, Ileana M Cristea, Frank L Conlon

Open access · goldAbstract readComparative StudyValidation Study
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  7. Use of Frogs as a Model to Study the Etiology of HLHS.Journal of cardiovascular development and disease · 2023
    Article
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  10. Review
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  14. Review
  15. Cold Spring Harbor perspectives in biology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Joel D FederspielPrinceton University, Princeton, New Jersey, United States of America.
Panna TandonUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.ORCID 0000-0002-9115-4173
Caralynn M WilczewskiUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.ORCID 0000-0003-0336-8815
Lauren WassonUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.ORCID 0000-0002-5193-5215
Laura E HerringUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.ORCID 0000-0003-4496-7312
Samvida S VenkateshPrinceton University, Princeton, New Jersey, United States of America.
Ileana M CristeaPrinceton University, Princeton, New Jersey, United States of America.
Frank L ConlonUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
University of North Carolina at Chapel Hill · USPrinceton University · US

Funding

Cardiac interaction networks as determinants of transcriptional specificityR01HD089275 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO, CRISTEA, ILEANA M. · 2017 to 2021
$2.9M
Functional investigation of the TBX20 cardiac interactomeR01HL127640 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO, CRISTEA, ILEANA M. · 2015 to 2018
$2.5M
Molecular networks of epicardial formation and functionR01HL135007 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CONLON, FRANK LEO · 2017 to 2020
$2.1M
NHLBI NIH HHS R01 HL127640NHLBI NIH HHS R01 HL135007NICHD NIH HHS R01 HD089275
6 · The paper itself

Abstract

Heart disease is the leading cause of death in the western world. Attaining a mechanistic understanding of human heart development and homeostasis and the molecular basis of associated disease states relies on the use of animal models. Here, we present the cardiac proteomes of 4 model vertebrates with dual circulatory systems: the pig (Sus scrofa), the mouse (Mus musculus), and 2 frogs (Xenopus laevis and Xenopus tropicalis). Determination of which proteins and protein pathways are conserved and which have diverged within these species will aid in our ability to choose the appropriate models for determining protein function and to model human disease. We uncover mammalian- and amphibian-specific, as well as species-specific, enriched proteins and protein pathways. Among these, we find and validate an enrichment in cell-cycle-associated proteins within Xenopus laevis. To further investigate functional units within cardiac proteomes, we develop a computational approach to profile the abundance of protein complexes across species. Finally, we demonstrate the utility of these data sets for predicting appropriate model systems for studying given cardiac conditions by testing the role of Kielin/chordin-like protein (Kcp), a protein found as enriched in frog hearts compared to mammals. We establish that germ-line mutations in Kcp in Xenopus lead to valve defects and, ultimately, cardiac failure and death. Thus, integrating these findings with data on proteins responsible for cardiac disease should lead to the development of refined, species-specific models for protein function and disease states.

Indexed as

Evolution, MolecularProteomeAnimalsCell CycleFemaleHeartHeart DiseasesHumansMass SpectrometryMiceModels, CardiovascularMyocardiumSus scrofaXenopus laevisXenopus ProteinsKCP protein, XenopusProteomeXenopus Proteins

Identifiers

PMID31490923
PMCPMC6750614
OpenAlexW2972262587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.