Evidence map›Paper›PMID 31489883›Full record

ArticleAnimals : an open access journal from MDPI2019

A Comparative Metagenomics Study on Gastrointestinal Microbiota in Amphibious Mudskippers and Other Vertebrate Animals.

Yunhai Yi, Lifeng Liang, Zhilin Wang, Peng Ai, Xinxin You, Chao Bian, Qiong Shi, Bo Dong

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Effects of underwater and semi-aquatic environments on gut tissue and microbiota of the mudskipper Boleophthalmus pectinirostris.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2021
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yunhai YiAgro-Biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou 510006, China. yiyunhai@genomics.cn.ORCID 0000-0002-3516-6700
Lifeng LiangShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China. lianglifeng@genomics.cn.ORCID 0000-0002-1904-1158
Zhilin WangAgro-Biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou 510006, China. wangzhilin@gdaas.cn.
Peng AiResearch & Development Department, Guangzhou Genedenovo Biotechnology Co. Ltd., Guangzhou 510320, China. aipeng0520@163.com.
Xinxin YouBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. youxinxin@genomics.cn.ORCID 0000-0002-0136-7387
Chao BianShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China. bianchao@genomics.cn.
Qiong ShiBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. shiqiong@genomics.cn.ORCID 0000-0002-6358-976X
Bo DongAgro-Biological Gene Research Center, Guangdong Academy of Agricultural Sciences, Guangzhou 510006, China. dongbo@gdaas.cn.
BGI Group (China) · CNGuangdong Academy of Agricultural Sciences · CN

Funding

Shenzhen Association for Science and Technology SZYSGZZ-2018001Shenzhen Dapeng Bureau for Promotion of Economy KY20180205
6 · The paper itself

Abstract

Gut microbiomes in various fish species were widely investigated with the rapid development of next-generation sequencing technologies. However, little is known about gastrointestinal (GI) microbial communities in mudskippers, a representative group of marine amphibious fishes, and their comparisons with other vertebrate animals from different habitats. Here, we performed a comprehensive analysis on microbial composition in five representative vertebrate groups (including amphibious mudskippers, marine and freshwater aquatic fishes, amphibians, and terrestrial animals) via operational taxonomic unit (OTU) survey and obtained a microbial gene catalog of five common fish species by metagenome sequencing. We observed that Cyanobacteria, Proteobacteria, Firmicutes, Bacteroidetes, and Fusobacteria were the most substantial bacteria in mudskippers. Differential variances in composition patterns of GI microbiota among the vertebrate groups were determined, although Proteobacteria and Firmicutes were the shared phyla with high abundance. In addition,

Indexed as

16S ribosomal DNA (rDNA)bacteriocin-related genesmetagenome sequencingmicrobiomeoperational taxonomic unit (OTU)symbiotic bacteriaterrestrial adaptation

Identifiers

PMID31489883
PMCPMC6769816
OpenAlexW2971372536

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.