Evidence map›Paper›PMID 31488862›Full record

ArticleScientific reports2019

Actin Cytoskeletal Reorganization Function of JRAB/MICAL-L2 Is Fine-tuned by Intramolecular Interaction between First LIM Zinc Finger and C-terminal Coiled-coil Domains.

Kazuhisa Miyake, Ayuko Sakane, Yuko Tsuchiya, Ikuko Sagawa, Yoko Tomida, Jiro Kasahara, Issei Imoto, Shio Watanabe, Daisuke Higo, Kenji Mizuguchi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Kazuhisa MiyakeDepartment of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan.
Ayuko SakaneDepartment of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan. sakane@tokushima-u.ac.jp.
Yuko TsuchiyaIntelligent Bioinformatics Research Team, Artificial Intelligence Research Center, The National Institute of Advanced Industrial Science and Technology, Tokyo, 135-0064, Japan.
Ikuko SagawaSupport Center for Advanced Medical Sciences, Tokushima University Graduate School of Biomedical Sciences, Tokushima, 770-8503, Japan.
Yoko TomidaDepartment of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan.
Jiro KasaharaDepartment of Neurobiology and Therapeutics, Faculty of Pharmaceutical Sciences, Tokushima University, Tokushima, 770-8503, Japan.
Issei ImotoDivision of Molecular Genetics, Aichi Cancer Center Research Institute, Nagoya, 464-8681, Japan.
Shio WatanabeThermo Fisher Scientific, Chromatography & MS Department, Application Group, LC-MS, Yokohama, 221-0022, Japan.
Daisuke HigoThermo Fisher Scientific, Chromatography & MS Department, Application Group, LC-MS, Yokohama, 221-0022, Japan.
Kenji MizuguchiNational Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, 567-0085, Japan.ORCID http://orcid.org/0000-0003-3021-7078
Takuya SasakiDepartment of Biochemistry, Tokushima University Graduate School of Medical Sciences, Tokushima, 770-8503, Japan. sasaki@tokushima-u.ac.jp.
Tokushima University · JPNational Institute of Biomedical Innovation, Health and Nutrition · JPThermo Fisher Scientific (Japan) · JPAichi Cancer Center · JPTokushima University Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

JRAB/MICAL-L2 is an effector protein of Rab13, a member of the Rab family of small GTPase. JRAB/MICAL-L2 consists of a calponin homology domain, a LIM domain, and a coiled-coil domain. JRAB/MICAL-L2 engages in intramolecular interaction between the N-terminal LIM domain and the C-terminal coiled-coil domain, and changes its conformation from closed to open under the effect of Rab13. Open-form JRAB/MICAL-L2 induces the formation of peripheral ruffles via an interaction between its calponin homology domain and filamin. Here, we report that the LIM domain, independent of the C-terminus, is also necessary for the function of open-form JRAB/MICAL-L2. In mechanistic terms, two zinc finger domains within the LIM domain bind the first and second molecules of actin at the minus end, potentially inhibiting the depolymerization of actin filaments (F-actin). The first zinc finger domain also contributes to the intramolecular interaction of JRAB/MICAL-L2. Moreover, the residues of the first zinc finger domain that are responsible for the intramolecular interaction are also involved in the association with F-actin. Together, our findings show that the function of open-form JRAB/MICAL-L2 mediated by the LIM domain is fine-tuned by the intramolecular interaction between the first zinc finger domain and the C-terminal domain.

Indexed as

3T3 CellsActinsAnimalsCytoskeletonHydrogen Deuterium Exchange-Mass SpectrometryMiceMicrofilament ProteinsModels, MolecularMutationProtein DomainsStructure-Activity RelationshipZinc FingersActinsJRAB protein, mouseMicrofilament Proteins

Identifiers

PMID31488862
PMCPMC6728388
OpenAlexW2971942300

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.