Evidence map›Paper›PMID 31488833›Full record

ArticleNature communications2019

PIF transcription factors link a neighbor threat cue to accelerated reproduction in Arabidopsis.

Vinicius Costa Galvāo, Anne-Sophie Fiorucci, Martine Trevisan, José Manuel Franco-Zorilla, Anupama Goyal, Emanuel Schmid-Siegert, Roberto Solano, Christian Fankhauser

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Vinicius Costa GalvāoCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-0973-222X
Anne-Sophie FiorucciCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-3254-5967
Martine TrevisanCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-6610-6954
José Manuel Franco-ZorillaGenomics Unit and Plant Molecular Biology Department, Centro Nacional de Biotecnologia (CSIC), Campus de Cantoblanco, Darwin 3, 28049, Madrid, Spain.
Anupama GoyalCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland.
Emanuel Schmid-SiegertSIB Swiss Institute for Bioinformatics, University of Lausanne, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-1339-5120
Roberto SolanoGenomics Unit and Plant Molecular Biology Department, Centro Nacional de Biotecnologia (CSIC), Campus de Cantoblanco, Darwin 3, 28049, Madrid, Spain.ORCID http://orcid.org/0000-0001-5459-2417
Christian FankhauserCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015, Lausanne, Switzerland. christian.fankhauser@unil.ch.ORCID http://orcid.org/0000-0003-4719-5901
University of Lausanne · CHCentro Nacional de Biotecnología · ESSIB Swiss Institute of Bioinformatics · CHSyngene International (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Changes in light quality indicative of competition for this essential resource influence plant growth and developmental transitions; however, little is known about neighbor proximity-induced acceleration of reproduction. Phytochrome B (phyB) senses light cues from plant competitors, ultimately leading to the expression of the floral inducers FLOWERING LOCUS T (FT) and TWIN SISTER of FT (TSF). Here we show that PHYTOCHROME INTERACTING FACTORs 4, 5 and 7 (PIF4, PIF5 and PIF7) mediate neighbor proximity-induced flowering, with PIF7 playing a prominent role. These transcriptional regulators act directly downstream of phyB to promote expression of FT and TSF. Neighbor proximity enhances PIF accumulation towards the end of the day, coinciding with enhanced floral inducer expression. We present evidence supporting direct PIF-regulated TSF expression. The relevance of our findings is illustrated by the prior identification of FT, TSF and PIF4 as loci underlying flowering time regulation in natural conditions.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantLightNicotianaPhosphatidylethanolamine Binding ProteinPhotoperiodPhytochrome BPlant DevelopmentReproductionArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsFT protein, ArabidopsisPhosphatidylethanolamine Binding ProteinPHYB protein, ArabidopsisPhytochrome BPIF4 protein, ArabidopsisPIF5 protein, ArabidopsisPIF7 protein, ArabidopsisTSF protein, Arabidopsis

Identifiers

PMID31488833
PMCPMC6728355
OpenAlexW2971795220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.