Evidence map›Paper›PMID 31488818›Full record

ArticleNature communications2019

Cell-type dependent enhancer binding of the EWS/ATF1 fusion gene in clear cell sarcomas.

Shingo Komura, Kenji Ito, Sho Ohta, Tomoyo Ukai, Mio Kabata, Fumiaki Itakura, Katsunori Semi, Yutaka Matsuda, Kyoichi Hashimoto, Hirofumi Shibata and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

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  9. Epigenetic determinants of fusion-driven sarcomas: paradigms and challenges.Frontiers in cell and developmental biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 1 country.

Shingo KomuraCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Kenji ItoCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Sho OhtaDivision of Stem Cell Pathology, Center for Experimental Medicine and Systems Biology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Tomoyo UkaiDivision of Stem Cell Pathology, Center for Experimental Medicine and Systems Biology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Mio KabataCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Fumiaki ItakuraCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Katsunori SemiCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Yutaka MatsudaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Kyoichi HashimotoCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Hirofumi ShibataCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Masamitsu SoneCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Norihide JoCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Kazuya SekiguchiCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.
Takatoshi OhnoDepartment of Orthopaedic Surgery, Gifu University Graduate School of Medicine, Gifu, 501-1194, Japan.
Haruhiko AkiyamaDepartment of Orthopaedic Surgery, Gifu University Graduate School of Medicine, Gifu, 501-1194, Japan.
Katsuji ShimizuSpine Center, Gifu Municipal Hospital, Gifu, 500-8513, Japan.
Knut WoltjenCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0003-2293-1183
Manabu OzawaLaboratory of Reproductive Systems Biology, Center for Experimental Medicine and Systems Biology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.
Junya ToguchidaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-0184-9685
Takuya YamamotoCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan.ORCID http://orcid.org/0000-0002-0022-3947
Yasuhiro YamadaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, 606-8507, Japan. yasu@ims.u-tokyo.ac.jp.
Kyoto University · JPGifu University · JPSystems Biology Institute · JPGifu Municipal Hospital · JPTokyo Medical University · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clear cell sarcoma (CCS) is a rare soft tissue sarcoma caused by the EWS/ATF1 fusion gene. Here, we established induced pluripotent stem cells (iPSCs) from EWS/ATF1-controllable murine CCS cells harboring sarcoma-associated genetic abnormalities. Sarcoma-iPSC mice develop secondary sarcomas immediately after EWS/ATF1 induction, but only in soft tissue. EWS/ATF1 expression induces oncogene-induced senescence in most cell types in sarcoma-iPSC mice but prevents it in sarcoma cells. We identify Tppp3-expressing cells in peripheral nerves as a cell-of-origin for these sarcomas. We show cell type-specific recruitment of EWS/ATF1 to enhancer regions in CCS cells. Finally, epigenetic silencing at these enhancers induces senescence and inhibits CCS cell growth through altered EWS/ATF1 binding. Together, we propose that distinct responses to premature senescence are the basis for the cell type-specificity of cancer development.

Indexed as

Activating Transcription Factor 1AnimalsCell Adhesion MoleculesCell Line, TumorCell ProliferationDisease Models, AnimalDNA-Binding ProteinsExomeFemaleGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseHumansMiceMice, Inbred BALB CMice, Inbred NODNeoplasms, ExperimentalActivating Transcription Factor 1Atf1 protein, mouseCeacam9 protein, mouseCell Adhesion MoleculesDNA-Binding ProteinsOncogene Proteins, FusionRNA-Binding Protein EWSS100b protein, mouseS100 Calcium Binding Protein beta Subunit

Identifiers

PMID31488818
PMCPMC6728361
OpenAlexW2971793947

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.