Evidence map›Paper›PMID 31488567›Full record

ArticleDevelopment (Cambridge, England)2019

Genomic architecture of Shh-dependent cochlear morphogenesis.

Victor Muthu, Alex M Rohacek, Yao Yao, Staci M Rakowiecki, Alexander S Brown, Ying-Tao Zhao, James Meyers, Kyoung-Jae Won, Shweta Ramdas, Christopher D Brown and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

  1. Restoring Iron Homeostasis via Smoothened Inhibition: A Novel Strategy Against Hearing Loss.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Review
  4. Retinoic acid receptor assembly dynamics governs dual functions in cochlear organogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Early Steps towards Hearing: Placodes and Sensory Development.International journal of molecular sciences · 2023
    Review
  10. Follistatin regulates the specification of the apical cochlea responsible for low-frequency hearing in mammals.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Victor MuthuDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0001-5735-4166
Alex M RohacekDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0001-9311-2797
Yao YaoDepartment of Animal and Dairy Science, Regenerative Bioscience Center, University of Georgia, Athens, GA 30602, USA.
Staci M RakowieckiDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Alexander S BrownDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Ying-Tao ZhaoDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
James MeyersDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kyoung-Jae WonBiotech Research and Innovation Centre (BRIC), Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark.
Shweta RamdasDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Christopher D BrownDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kevin A PetersonThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Douglas J EpsteinDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA epsteind@pennmedicine.upenn.edu.ORCID 0000-0002-4274-4521
University of Pennsylvania · USJackson Laboratory · USUniversity of Copenhagen · DKUniversity of Georgia · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
Sensory cell fate specification in the inner earR01DC006254 · NIDCD · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 2003 to 2023
$7.6M
Transcriptional control of Hedgehog/Gli target enhancersR01GM124251 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BAROLO, SCOTT, PETERSON, KEVIN ANTHONY · 2017 to 2020
$1.4M
NIDCD NIH HHS R01 DC006254NIGMS NIH HHS R01 GM124251NIGMS NIH HHS T32 GM008216
6 · The paper itself

Abstract

The mammalian cochlea develops from a ventral outgrowth of the otic vesicle in response to Shh signaling. Mouse embryos lacking Shh or its essential signal transduction components display cochlear agenesis; however, a detailed understanding of the transcriptional network mediating this process is unclear. Here, we describe an integrated genomic approach to identify Shh-dependent genes and associated regulatory sequences that promote cochlear duct morphogenesis. A comparative transcriptome analysis of otic vesicles from mouse mutants exhibiting loss (

Indexed as

GenomeAnimalsBase SequenceCochleaEmbryo, MammalianEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHedgehog ProteinsMice, TransgenicMorphogenesisReproducibility of ResultsHedgehog ProteinsShh protein, mouseCochleaGene regulationMouseOrgan of CortiOtic vesicleSensory developmentShh signaling

Identifiers

PMID31488567
PMCPMC6765179
OpenAlexW2971930411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.