Evidence map›Paper›PMID 31488543›Full record

ArticleThe Journal of biological chemistry2019

Transforming growth factor β1 alters the 3'-UTR of mRNA to promote lung fibrosis.

Junsuk Ko, Tingting Mills, Jingjing Huang, Ning-Yuan Chen, Tinne C J Mertens, Scott D Collum, Garam Lee, Yu Xiang, Leng Han, Yang Zhou and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Unraveling the role of MiR-181 in skin fibrosis pathogenesis by targeting NUDT21.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  8. International journal of ophthalmology · 2023
    Article
  9. 3'UTR shortening of HAS2 promotes hyaluronan hyper-synthesis and bioenergetic dysfunction in pulmonary hypertension.Matrix biology : journal of the International Society for Matrix Biology · 2022
    Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Junsuk KoDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Tingting MillsDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Jingjing HuangDepartment of Geriatrics, The Second Affiliated Hospital of Nanjing Medical University, Nanjing, 210003 Jiangsu, China.
Ning-Yuan ChenDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Tinne C J MertensDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Scott D CollumDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Garam LeeDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Yu XiangDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Leng HanDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Yang ZhouDepartment of Molecular Microbiology and Immunology, Brown University, Providence, Rhode Island 02912.
Chun Geun LeeDepartment of Molecular Microbiology and Immunology, Brown University, Providence, Rhode Island 02912.
Jack A EliasDepartment of Molecular Microbiology and Immunology, Brown University, Providence, Rhode Island 02912.
Soma S K JyothulaDepartment of Internal Medicine, McGovern Medical School, the University of Texas Health Science Center, Houston, Texas 77030.
Keshava RajagopalDepartment of Internal Medicine, McGovern Medical School, the University of Texas Health Science Center, Houston, Texas 77030.
Harry Karmouty-QuintanaDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030.
Michael R BlackburnDepartment of Biochemistry and Molecular Biology, the University of Texas Health Science Center, Houston, Texas 77030 Michael.R.Blackburn@uth.tmc.edu.
The University of Texas Health Science Center at Houston · USBrown University · USSecond Affiliated Hospital of Nanjing Medical University · CN

Funding

Tracking and Evaluation CoreU54GM115677 · NIGMS · BROWN UNIVERSITY · PI ROUNDS, SHARON IRENE SMITH · 2016 to 2025
$45.0M
Uncoupling of IL-1 beta and VEGF-A Crosstalk Contributes to Impaired Arteriogenesis Response to Ischemia in Chronic Diabetes MellitusP20GM103652 · NIGMS · OCEAN STATE RESEARCH INSTITUTE, INC. · PI CHOUDHARY, GAURAV, HARRINGTON, ELIZABETH O · 2013 to 2022
$21.3M
Trangenic Mouse Breeding CoreP01HL114457 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHANG, YUJIN · 2013 to 2017
$10.0M
Adenosine Signaling and Lung FibrosisR01HL070952 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLACKBURN, MICHAEL R · 2002 to 2019
$5.7M
3'UTR Shortening In Pulmonary Vascular DiseaseR01HL138510 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KARMOUTY-QUINTANA, HARRY · 2017 to 2021
$2.3M
NHLBI NIH HHS P01 HL114457NHLBI NIH HHS R01 HL070952NHLBI NIH HHS R01 HL138510NIGMS NIH HHS P20 GM103652NIGMS NIH HHS U54 GM115677
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a chronic disease characterized by the pathological remodeling of air sacs as a result of excessive accumulation of extracellular matrix (ECM) proteins, but the mechanism governing the robust protein expression is poorly understood. Our recent findings demonstrate that alternative polyadenylation (APA) caused by NUDT21 reduction is important for the increased expression of fibrotic mediators and ECM proteins in lung fibroblasts by shortening the 3'-untranslated regions (3'-UTRs) of mRNAs and stabilizing their transcripts, therefore activating pathological signaling pathways. Despite the importance of NUDT21 reduction in the regulation of fibrosis, the underlying mechanisms for the depletion are unknown. We demonstrate here that NUDT21 is depleted by TGFβ1. We found that miR203, which is increased in IPF, was induced by TGFβ1 to target the NUDT21 3'-UTR, thus depleting NUDT21 in human and mouse lung fibroblasts. TGFβ1-mediated NUDT21 reduction was attenuated by the miR203 inhibitor antagomiR203 in fibroblasts. TGFβ1 transgenic mice revealed that TGFβ1 down-regulates NUDT21 in fibroblasts

Indexed as

3' Untranslated RegionsAnimalsCells, CulturedCleavage And Polyadenylation Specificity FactorDown-RegulationFibroblastsFibrosisHumansLungMice, Inbred C57BLMice, TransgenicMicroRNAsModels, BiologicalPolyadenylationRNA, MessengerTransforming Growth Factor beta13' Untranslated RegionsCleavage And Polyadenylation Specificity FactorMicroRNAsMIRN203 microRNA, humanNudt21 protein, humanNudt21 protein, mouseRNA, MessengerTransforming Growth Factor beta1alternative polyadenylationAPAmiR203mRNANUDT21polyadenylationpost-transcriptional regulationpulmonary fibrosistransforming growth factor β (TGFβ)

Identifiers

PMID31488543
PMCPMC6816088
OpenAlexW2971788876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.