Evidence map›Paper›PMID 31487399›Full record

ArticleThe New phytologist2020

Phospho-mutant activity assays provide evidence for alternative phospho-regulation pathways of the transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR.

Regina Gratz, Tzvetina Brumbarova, Rumen Ivanov, Ksenia Trofimov, Laura Tünnermann, Rocio Ochoa-Fernandez, Tim Blomeier, Johannes Meiser, Stefanie Weidtkamp-Peters, Matias D Zurbriggen and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Regulation of vacuole fusion in stomata by dephosphorylation of the HOPS subunit VPS39.The Plant journal : for cell and molecular biology · 2025
    Article
  3. Abscisic acid regulates iron accumulation in plant seeds via the PYLs-bHLH IVc-YSLs module.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Regina GratzInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0002-8820-7211
Tzvetina BrumbarovaInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0002-3104-6795
Rumen IvanovInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0001-7909-4123
Ksenia TrofimovInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.
Laura TünnermannInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.
Rocio Ochoa-FernandezInstitute of Synthetic Biology, Heinrich-Heine University, 40225, Düsseldorf, Germany.
Tim BlomeierInstitute of Synthetic Biology, Heinrich-Heine University, 40225, Düsseldorf, Germany.
Johannes MeiserDepartment of Biosciences-Plant Biology, Saarland University, 66123, Saarbruecken, Germany.ORCID 0000-0002-9093-6210
Stefanie Weidtkamp-PetersCenter for Advanced Imaging, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0001-7734-3771
Matias D ZurbriggenInstitute of Synthetic Biology, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0002-3523-2907
Petra BauerInstitute of Botany, Heinrich-Heine University, 40225, Düsseldorf, Germany.ORCID 0000-0002-0404-4532
Heinrich Heine University Düsseldorf · DECluster of Excellence on Plant Sciences · DELuxembourg Institute of Health · LU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The key basic helix-loop-helix (bHLH) transcription factor in iron (Fe) uptake, FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT), is controlled by multiple signaling pathways, important to adjust Fe acquisition to growth and environmental constraints. FIT protein exists in active and inactive protein pools, and phosphorylation of serine Ser272 in the C-terminus, a regulatory domain of FIT, provides a trigger for FIT activation. Here, we use phospho-mutant activity assays and study phospho-mimicking and phospho-dead mutations of three additional predicted phosphorylation sites, namely at Ser221 and at tyrosines Tyr238 and Tyr278, besides Ser 272. Phospho-mutations at these sites affect FIT activities in yeast, plant, and mammalian cells. The diverse array of cellular phenotypes is seen at the level of cellular localization, nuclear mobility, homodimerization, and dimerization with the FIT-activating partner bHLH039, promoter transactivation, and protein stability. Phospho-mimicking Tyr mutations of FIT disturb fit mutant plant complementation. Taken together, we provide evidence that FIT is activated through Ser and deactivated through Tyr site phosphorylation. We therefore propose that FIT activity is regulated by alternative phosphorylation pathways.

Indexed as

Amino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsBiological AssayCHO CellsCricetinaeCricetulusModels, BiologicalMutationPhosphorylationPhosphotyrosineProtein MultimerizationProtein StabilityTranscriptional ActivationArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsFIT1 protein, ArabidopsisPhosphotyrosineArabidopsisbHLH039FITiron uptakeIRT1serine phosphorylationtranscription factortyrosine phosphorylation

Identifiers

PMID31487399
PMCPMC6916400
OpenAlexW2972181179

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.