Evidence map›Paper›PMID 31487323›Full record

ArticlePloS one2019

Differential gene expression in bovine endometrial epithelial cells after challenge with LPS; specific implications for genes involved in embryo maternal interactions.

Yongzhi Guo, Tom van Schaik, Naveed Jhamat, Adnan Niazi, Metasu Chanrot, Gilles Charpigny, Jean Francois Valarcher, Erik Bongcam-Rudloff, Göran Andersson, Patrice Humblot

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Yongzhi GuoSwedish University of Agricultural Sciences, Department of Clinical Sciences, Division of Reproduction, Uppsala, Sweden.ORCID 0000-0002-5057-9095
Tom van SchaikSwedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Section of Molecular Genetics, Uppsala, Sweden.ORCID 0000-0001-7850-5074
Naveed JhamatSwedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Section of Molecular Genetics, Uppsala, Sweden.
Adnan NiaziSwedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Section of Bioinformatics and SLU Bioinformatics Infrastructure, Uppsala, Sweden.ORCID 0000-0003-0311-5279
Metasu ChanrotSwedish University of Agricultural Sciences, Department of Clinical Sciences, Division of Reproduction, Uppsala, Sweden.
Gilles CharpignyINRA, UMR1198 Biologie du Développement et Reproduction, Jouy-en-Josas, France.
Jean Francois ValarcherSwedish University of Agricultural Sciences, Department of Clinical Sciences, Division of Ruminant Medicine, Uppsala, Sweden.
Erik Bongcam-RudloffSwedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Section of Bioinformatics and SLU Bioinformatics Infrastructure, Uppsala, Sweden.
Göran AnderssonSwedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, Section of Molecular Genetics, Uppsala, Sweden.
Patrice HumblotSwedish University of Agricultural Sciences, Department of Clinical Sciences, Division of Reproduction, Uppsala, Sweden.
Swedish University of Agricultural Sciences · SEInformation Technology University · PKLaboratoire de Biologie du Développement · FRThe Netherlands Cancer Institute · NLUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lipopolysaccharide (LPS) expressed on the surface of Gram-negative bacteria activates pro-inflammatory pathways, dys-regulates the function of endometrial cells and is a key player in the mechanisms involved in endometritis. This study aimed to investigate the effects of LPS on bovine endometrial epithelial cells (bEEC) from whole transcriptome with a special focus on genes involved in embryo-maternal interactions. Following in vitro culture, bEEC from three cows were exposed to 0, 2, and 8 μg/mL LPS for 24h. RNA samples extracted at 0 and 24 hours were analyzed by RNA sequencing (RNA-seq). At 24h, 2035 differentially expressed genes (DEGs) were identified between controls and samples treated with 2 μg/mL LPS. Gene ontology analysis showed that over-expressed DEGs were associated to immune response, response to stress and external stimuli, catalytic activity, and cell cycle. Genes associated with cell membrane and cell adhesion pathways were under-expressed. LPS induced changes in expression of specific genes related to embryo-maternal interactions including under-expression of eight members of the cadherin superfamily, over-expression of six members of the mucin family, and differential expression of a large set of genes binding the above molecules and of more than 20 transcripts coding for cytokines and their receptors. Type I interferon-τ dependent genes were also over-expressed. From a sub-set of 19 genes, (biological replicates of bEEC from cows taken at time 6 (n = 3), 24 (n = 6) and 48 hours (n = 3), and 2 technical replicates per sample) differential gene expression was confirmed by RT2-qPCR (r2 between fold changes at 24 hours by RT2-qPCR and RNA-seq = 0.97). These results indicate that LPS affects the function of bEEC in many ways by differential transcription, glycolytic metabolism and oxidative stress. Many transcriptomic signatures related to implantation and embryo maternal interactions were strongly affected by LPS. These results pave the way for further studies to investigate the duration of these changes and their possible impact on endometrial function and fertility.

Indexed as

TranscriptomeAnimalsBiomarkersCattleEmbryo ImplantationEmbryo, MammalianEndometriumEpithelial CellsFemaleGene Expression ProfilingLipopolysaccharidesBiomarkersLipopolysaccharides

Identifiers

PMID31487323
PMCPMC6728075
OpenAlexW2972088882

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.