Evidence map›Paper›PMID 31487287›Full record

ArticlePLoS neglected tropical diseases2019

Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico.

Carina M Hall, Sierra Jaramillo, Rebecca Jimenez, Nathan E Stone, Heather Centner, Joseph D Busch, Nicole Bratsch, Chandler C Roe, Jay E Gee, Alex R Hoffmaster and 7 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Discovery of the Phosphonate Flavophos Produced byJournal of the American Chemical Society · 2026
    Article
  2. Review
  3. Discovery of the Phosphonate Flavophos Produced bybioRxiv : the preprint server for biology · 2026
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  13. Phylogenetic and phenotypic characterization ofFrontiers in microbiology · 2024
    Article
  14. The Expanding Global Footprint of Burkholderia pseudomallei and Melioidosis.The American journal of tropical medicine and hygiene · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Crystal structure of betaine aldehyde dehydrogenase from Burkholderia pseudomallei.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  20. Crystal structure of a short-chain dehydrogenase/reductase from Burkholderia phymatum in complex with NAD.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Carina M HallThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Sierra JaramilloThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Rebecca JimenezU.S. Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, San Juan, Puerto Rico, United States of America.
Nathan E StoneThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Heather CentnerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Joseph D BuschThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Nicole BratschThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Chandler C RoeThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Jay E GeeBacterial Special Pathogens Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Alex R HoffmasterBacterial Special Pathogens Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Sarai Rivera-GarciaU.S. Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, San Juan, Puerto Rico, United States of America.
Fred SolteroU.S. Department of Agriculture, Animal and Plant Health Inspection Service, Veterinary Services, San Juan, Puerto Rico, United States of America.
Kyle RyffDengue Branch, Centers for Disease Control and Prevention, San Juan, Puerto Rico, United States of America.ORCID 0000-0002-9698-0212
Janice Perez-PadillaDengue Branch, Centers for Disease Control and Prevention, San Juan, Puerto Rico, United States of America.
Paul KeimThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
Jason W SahlThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.
David M WagnerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America.ORCID 0000-0003-2684-6007

Funding

ACL HHS U01CK000480NCEZID CDC HHS U01 CK000480
6 · The paper itself

Abstract

backgroundBurkholderia pseudomallei is a soil-dwelling bacterium and the causative agent of melioidosis. The global burden and distribution of melioidosis is poorly understood, including in the Caribbean. B. pseudomallei was previously isolated from humans and soil in eastern Puerto Rico but the abundance and distribution of B. pseudomallei in Puerto Rico as a whole has not been thoroughly investigated. METHODOLOGY/PRINCIPAL

findingsWe collected 600 environmental samples (500 soil and 100 water) from 60 sites around Puerto Rico. We identified B. pseudomallei by isolating it via culturing and/or using PCR to detect its DNA within complex DNA extracts. Only three adjacent soil samples from one site were positive for B. pseudomallei with PCR; we obtained 55 isolates from two of these samples. The 55 B. pseudomallei isolates exhibited fine-scale variation in the core genome and contained four novel genomic islands. Phylogenetic analyses grouped Puerto Rico B. pseudomallei isolates into a monophyletic clade containing other Caribbean isolates, which was nested inside a larger clade containing all isolates from Central/South America. Other Burkholderia species were commonly observed in Puerto Rico; we cultured 129 isolates from multiple soil and water samples collected at numerous sites around Puerto Rico, including representatives of B. anthina, B. cenocepacia, B. cepacia, B. contaminans, B. glumae, B. seminalis, B. stagnalis, B. ubonensis, and several unidentified novel Burkholderia spp. CONCLUSIONS/SIGNIFICANCE: B. pseudomallei was only detected in three soil samples collected at one site in north central Puerto Rico with only two of those samples yielding isolates. All previous human and environmental B. pseudomallei isolates were obtained from eastern Puerto Rico. These findings suggest B. pseudomallei is ecologically established and widely dispersed in the environment in Puerto Rico but rare. Phylogeographic patterns suggest the source of B. pseudomallei populations in Puerto Rico and elsewhere in the Caribbean may have been Central or South America.

Indexed as

BurkholderiaBurkholderia pseudomalleiGenomic IslandsMelioidosisPhylogenyPolymerase Chain ReactionPuerto RicoSequence Analysis, DNASoil MicrobiologyWater Microbiology

Identifiers

PMID31487287
PMCPMC6748447

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.