Evidence map›Paper›PMID 31487148›Full record

ArticleACS chemical biology2019

L,D-Transpeptidase Specific Probe Reveals Spatial Activity of Peptidoglycan Cross-Linking.

Sean E Pidgeon, Alexis J Apostolos, Julia M Nelson, Moagi Shaku, Binayak Rimal, M Nurul Islam, Dean C Crick, Sung Joon Kim, Martin S Pavelka, Bavesh D Kana and 1 more

Open access · hybridAbstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Non-canonical peptidoglycan cross-linking is essential forbioRxiv : the preprint server for biology · 2026
    Article
  6. Activity Profiling of Mycobacterial L,D-Transpeptidases.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Peptidoglycan LD-Transpeptidases.Antibiotics (Basel, Switzerland) · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Identification of a family of peptidoglycan transpeptidases reveals thatProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Chemical science · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Sean E PidgeonDepartment of Chemistry , Lehigh University , Bethlehem , Pennsylvania 18015 , United States.
Alexis J ApostolosDepartment of Chemistry , Lehigh University , Bethlehem , Pennsylvania 18015 , United States.
Julia M NelsonDepartment of Chemistry , Lehigh University , Bethlehem , Pennsylvania 18015 , United States.
Moagi ShakuDST/NRF Centre of Excellence for Biomedical TB Research, School of Pathology, Faculty of Health Sciences , University of the Witwatersrand and the National Health Laboratory Service , P.O. Box 1038, Johannesburg 2000 , South Africa.
Binayak RimalInstitute of Biomedical Studies , Baylor University , Waco , Texas 76798 , United States.
M Nurul IslamMycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology , Colorado State University , Fort Collins , Colorado 80523 , United States.
Dean C CrickMycobacteria Research Laboratories, Department of Microbiology, Immunology, and Pathology , Colorado State University , Fort Collins , Colorado 80523 , United States.ORCID 0000-0001-9281-7058
Sung Joon KimDepartment of Chemistry , Howard University , Washington , DC 20059 , United States.
Martin S PavelkaDepartment of Microbiology and Immunology , University of Rochester Medical Center , Rochester , New York 14642 , United States.
Bavesh D KanaDST/NRF Centre of Excellence for Biomedical TB Research, School of Pathology, Faculty of Health Sciences , University of the Witwatersrand and the National Health Laboratory Service , P.O. Box 1038, Johannesburg 2000 , South Africa.
Marcos M PiresDepartment of Chemistry , Lehigh University , Bethlehem , Pennsylvania 18015 , United States.ORCID 0000-0002-5676-0725
Lehigh University · USColorado State University · USNational Health Laboratory Service · ZABaylor University · USHoward University · USUniversity of Rochester Medical Center · US

Funding

Unraveling Bacterial Cell Wall Biosynthesis and Sensing via Synthetic AnalogsR35GM124893 · NIGMS · UNIVERSITY OF VIRGINIA · PI Marcos M. Pires · 2017 to 2026
$3.6M
Analysis of a novel peptidoglycan assembly pathway in mycobacteriaR01AI139058 · NIAID · UNIVERSITY OF ROCHESTER · PI PAVELKA, MARTIN S. · 2018 to 2022
$2.6M
Assembly of the mycobacterial cell wallR01AI073772 · NIAID · UNIVERSITY OF ROCHESTER · PI PAVELKA, MARTIN S. · 2008 to 2012
$1.9M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI073772NIAID NIH HHS R01 AI139058NIGMS NIH HHS R35 GM124893
6 · The paper itself

Abstract

Peptidoglycan (PG) is a cross-linked, meshlike scaffold endowed with the strength to withstand the internal pressure of bacteria. Bacteria are known to heavily remodel their peptidoglycan stem peptides, yet little is known about the physiological impact of these chemical variations on peptidoglycan cross-linking. Furthermore, there are limited tools to study these structural variations, which can also have important implications on cell wall integrity and host immunity. Cross-linking of peptide chains within PG is an essential process, and its disruption thereof underpins the potency of several classes of antibiotics. Two primary cross-linking modes have been identified that are carried out by D,D-transpeptidases and L,D-transpeptidases (Ldts). The nascent PG from each enzymatic class is structurally unique, which results in different cross-linking configurations. Recent advances in PG cellular probes have been powerful in advancing the understanding of D,D-transpeptidation by Penicillin Binding Proteins (PBPs). In contrast, no cellular probes have been previously described to directly interrogate Ldt function in live cells. Herein, we describe a new class of Ldt-specific probes composed of structural analogs of nascent PG, which are metabolically incorporated into the PG scaffold by Ldts. With a panel of tetrapeptide PG stem mimics, we demonstrated that subtle modifications such as amidation of iso-Glu can control PG cross-linking. Ldt probes were applied to quantify and track the localization of Ldt activity in

Indexed as

AminoacyltransferasesBacterial ProteinsEnterococcus faeciumFluoresceinsFluorescent DyesMicroscopy, ConfocalMicroscopy, FluorescenceMycobacterium smegmatisMycobacterium tuberculosisOligopeptidesPeptidoglycanAminoacyltransferasesBacterial ProteinsFluoresceinsFluorescent DyesOligopeptidesPeptidoglycanpeptidoglycan transpeptidase

Identifiers

PMID31487148
PMCPMC6804245
OpenAlexW2972225144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.