Evidence map›Paper›PMID 31487118›Full record

ArticleInfluenza and other respiratory viruses2019

A field-deployable insulated isothermal RT-PCR assay for identification of influenza A (H7N9) shows good performance in the laboratory.

Ken Inui, Tung Nguyen, Hsin-Jou Tseng, ChuanFu Mark Tsai, Yun-Long Tsai, Simon Chung, Pawin Padungtod, Huachen Zhu, Yi Guan, Wantanee Kalpravidh and 1 more

Open access · goldAbstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Development and validation of an insulated isothermal PCR assay for the rapid detection ofJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Article
  5. Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 6 countries.

Ken InuiFood and Agriculture Organization of the United Nations (FAO), Hanoi, Vietnam.
Tung NguyenDepartment of Animal Health, Hanoi, Vietnam.
Hsin-Jou TsengGeneReach USA, Lexington, Massachusetts.
ChuanFu Mark TsaiGeneReach USA, Lexington, Massachusetts.
Yun-Long TsaiGeneReach USA, Lexington, Massachusetts.
Simon ChungGeneReach USA, Lexington, Massachusetts.
Pawin PadungtodFood and Agriculture Organization of the United Nations (FAO), Hanoi, Vietnam.
Huachen ZhuJoint Institute of Virology (Shantou University - The University of Hong Kong), Shantou, China.
Yi GuanJoint Institute of Virology (Shantou University - The University of Hong Kong), Shantou, China.
Wantanee KalpravidhFood and Agriculture Organization of the United Nations (FAO), Regional office for Asia and the Pacific, Bangkok, Thailand.
Filip ClaesFood and Agriculture Organization of the United Nations (FAO), Regional office for Asia and the Pacific, Bangkok, Thailand.ORCID 0000-0002-5705-7572
Food and Agriculture Organization of the United Nations · ITGenex Systems (United States) · USShantou University · CNDepartment of Animal Health · VN

Funding

NIAID NIH HHS HHSN272201400006C
6 · The paper itself

Abstract

backgroundAvian influenza A (H7N9) remains circulating in China. For countries at risk of introduction of H7N9, such as Vietnam, early detection of H7N9 virus is essential for the early containment of the virus. Insulated isothermal reverse transcriptase PCR (iiRT-PCR) is a portable PCR system that can be deployed under field conditions to identify pathogens at the sampling site. Applying PCR at the sampling site will greatly reduce the time to obtain a diagnostic result which allows the veterinary authority to take immediate action to contain disease spreading.

objectiveTo determine analytical and diagnostic sensitivity and specificity of the portable iiRT-PCR for H7N9 virus detection.

methodsA panel of 59 virus isolates, including H7N9, avian influenza viruses of subtype H1 to H13, swine and human influenza viruses, Newcastle disease virus, and infectious bursal disease virus, were tested by H7 and N9 iiRT-PCR reagents, using probes and primers specific to H7 or N9, in comparison with laboratory-based real-time RT-PCR assays to determine analytical sensitivity and specificity. Fifty oropharyngeal samples from experimentally infected chicken and ducks with H7N9 and 50 non-infected control swabs were tested by the H7 iiRT-PCR to determine diagnostic sensitivity and specificity.

resultsThe H7 and N9 iiRT-PCR reagents yielded comparable levels of analytical sensitivity and specificity with real-time RT-PCR for the detection of H7N9 virus. Diagnostic sensitivity and specificity of H7 iiRT-PCR were 98% and 100%, respectively.

conclusionThe observed high sensitivity and specificity of iiRT-PCR for H7N9 detection show its potential for early detection of H7N9 in risk-based surveillance.

Indexed as

AnimalsChickensDucksInfluenza A Virus, H7N9 SubtypeInfluenza in BirdsMolecular Diagnostic TechniquesOropharynxPoint-of-Care TestingPolymerase Chain ReactionSensitivity and SpecificityVietnamdiagnosticinfluenza A (H7N9)PCRsensitivityspecificity

Identifiers

PMID31487118
PMCPMC6800302
OpenAlexW2971463032

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.