Evidence map›Paper›PMID 31486214›Full record

ArticleEMBO reports2019

An LTR retrotransposon-derived lncRNA interacts with RNF169 to promote homologous recombination.

Bing Deng, Wenli Xu, Zelin Wang, Chang Liu, Penghui Lin, Bin Li, Qiaojuan Huang, Jianhua Yang, Hui Zhou, Lianghu Qu

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Article
  16. Long Intergenic Noncoding RNAInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Human endogenous retroviruses in development and disease.Computational and structural biotechnology journal · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Bing DengMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Wenli XuMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Zelin WangMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Chang LiuMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Penghui LinMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Bin LiMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Qiaojuan HuangMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Jianhua YangMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.ORCID 0000-0003-3863-2786
Hui ZhouMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.
Lianghu QuMOE Key Laboratory of Gene Function and Regulation, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China.ORCID 0000-0003-3657-2863
Sun Yat-sen University · CN

Funding

Ministry of Science and Technology of the People's Republic of China 2011CB811300Ministry of Science and Technology of the People's Republic of China 2017YFA0504400National Natural Science Foundation of China 31471223National Natural Science Foundation of China 31671349National Natural Science Foundation of China 31770879
6 · The paper itself

Abstract

LTR retrotransposons are abundant repetitive elements in the human genome, but their functions remain poorly understood. Here, we report the function and regulatory mechanism of an ERV-9 LTR retrotransposon-derived lncRNA called p53-regulated lncRNA for homologous recombination (HR) repair 1 (PRLH1) in human cells. PRLH1 is highly expressed in p53-mutated hepatocellular carcinoma (HCC) samples and promotes cell proliferation in p53-mutated HCC cells, and its transcription is promoted by NF-Y and suppressed by p53. Mechanistically, PRLH1 specifically binds to an uncharacterized domain of RNF169 through two GCUUCA boxes in its 5' terminal region to form a DNA repair complex that supplants 53BP1 at double-strand break (DSB) sites and then promotes the initiation of HR repair. Notably, PRLH1 is essential for the stabilization of RNF169, acting as an RNA platform to recruit and assemble HR protein factors. This study characterizes PRLH1 as a novel HR-promoting factor and provides new insights into the function and mechanism of LTR retrotransposon-derived lncRNAs.

Indexed as

Epistasis, GeneticHomologous RecombinationRetroelementsTerminal Repeat SequencesBase SequenceBinding SitesCarcinoma, HepatocellularCCAAT-Binding FactorCell ProliferationDNA Breaks, Double-StrandedDNA RepairGene Expression RegulationHumansLiver NeoplasmsModels, BiologicalPromoter Regions, GeneticCCAAT-Binding FactorRetroelementsRNA, Long NoncodingRNF169 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1Tumor Suppressor Protein p53Ubiquitin-Protein LigasesHR repairlncRNALTR retrotransposonp53RNF169

Identifiers

PMID31486214
PMCPMC6832013
OpenAlexW2971402088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.