ArticleRice (New York, N.Y.)2019
Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study.
Article in Rice (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.
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Who cites it
19 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.
- A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.International journal of molecular sciences · 2019Pooled it
- Identification and functional analysis of MeJA-responsive bHLH family genes in Taraxacum kok-saghyz.Journal of plant research · 2026Article
- Tetraspanin OsTET8 acts as a negative regulator of root development in rice.Rice (New York, N.Y.) · 2025Article
- The Effect of Bromine and Iodine on the Plant Growth, Phytochemical Composition and Antioxidant Capacity of Dandelion (Molecules (Basel, Switzerland) · 2025Article
- QTL-seq identifies genomic region associated with the crown root development under Jasmonic acid response.Functional & integrative genomics · 2024Article
- Uncovering the Genomic Regions Associated with Yield Maintenance in Rice Under Drought Stress Using an Integrated Meta-Analysis Approach.Rice (New York, N.Y.) · 2024Article
- Quantitative trait loci for grain mineral element accumulation in Vietnamese rice landraces.PloS one · 2024Article
- Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice.Rice (New York, N.Y.) · 2023Article
- Mapping the Genomic Regions Controlling Germination Rate and Early Seedling Growth Parameters in Rice.Genes · 2023Article
- Genomic regions and candidate genes selected during the breeding of rice in Vietnam.Evolutionary applications · 2022Article
- Genome-wide association, RNA-seq and iTRAQ analyses identify candidate genes controlling radicle length of wheat.Frontiers in plant science · 2022Article
- Mitigating tradeoffs in plant breeding.iScience · 2021Review
- Resequencing of 672 Native Rice Accessions to Explore Genetic Diversity and Trait Associations in Vietnam.Rice (New York, N.Y.) · 2021Article
- Genome-Wide Association Mapping of Salinity Tolerance at the Seedling Stage in a Panel of Vietnamese Landraces Reveals New Valuable QTLs for Salinity Stress Tolerance Breeding in Rice.Plants (Basel, Switzerland) · 2021Article
- Jasmonates and Plant Salt Stress: Molecular Players, Physiological Effects, and Improving Tolerance by Using Genome-Associated Tools.International journal of molecular sciences · 2021Review
- Effects ofFrontiers in plant science · 2021Article
- Article
- A genome-wide association study reveals the quantitative trait locus and candidate genes that regulate phosphate efficiency in a Vietnamese rice collection.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Jasmonates-the Master Regulator of Rice Development, Adaptation and Defense.Plants (Basel, Switzerland) · 2019Review
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Authors and funding
11 authors at 3 institutions in 2 countries.
Funding
Abstract
backgroundDue to their sessile life style, plant survival is dependent on the ability to build up fast and highly adapted responses to environmental stresses by modulating defense response and organ growth. The phytohormone jasmonate plays an essential role in regulating these plant responses to stress.
resultsTo assess variation of plant growth responses and identify genetic determinants associated to JA treatment, we conducted a genome-wide association study (GWAS) using an original panel of Vietnamese rice accessions. The phenotyping results showed a high natural genetic variability of the 155 tested rice accessions in response to JA for shoot and root growth. The level of growth inhibition by JA is different according to the rice varieties tested. We conducted genome-wide association study and identified 28 significant associations for root length (RTL), shoot length (SHL), root weight (RTW), shoot weight (SHW) and total weight (TTW) in response to JA treatment. Three common QTLs were found for RTL, RTW and SHL. Among a list of 560 candidate genes found to co-locate with the QTLs, a transcriptome analysis from public database for the JA response allows us to identify 232 regulated genes including several JA-responsive transcription factors known to play a role in stress response.
conclusionOur genome-wide association study shows that common and specific genetic elements are associated with inhibition of shoot and root growth under JA treatment suggesting the involvement of a complex JA-dependent genetic control of rice growth inhibition at the whole plant level. Besides, numerous candidate genes associated to stress and JA response are co-located with the association loci, providing useful information for future studies on genetics and breeding to optimize the growth-defense trade-off in rice.
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