Evidence map›Paper›PMID 31485028›Full record

ArticleEuropean journal of human genetics : EJHG2020

Copy number variants in lipid metabolism genes are associated with gallstones disease in men.

Eduardo Pérez-Palma, Bernabé I Bustos, Dennis Lal, Stephan Buch, Lorena Azocar, Mohammad Reza Toliat, Wolfgang Lieb, Andre Franke, Sebastian Hinz, Greta Burmeister and 13 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 3 countries.

Eduardo Pérez-PalmaInstitute of Biomedical Sciences, Faculty of Medicine and Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile.ORCID http://orcid.org/0000-0003-0546-5141
Bernabé I BustosInstitute of Biomedical Sciences, Faculty of Medicine and Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile.ORCID http://orcid.org/0000-0003-2679-9503
Dennis LalCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Stephan BuchDepartment of Medicine I, University Hospital Dresden, Technische Universität Dresden, TU Dresden, Dresden, Germany.
Lorena AzocarDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Mohammad Reza ToliatCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Wolfgang LiebInstitute of Epidemiology and Biobank PopGen, Christian-Albrechts-University of Kiel, Kiel, Germany.
Andre FrankeInstitute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany.ORCID http://orcid.org/0000-0003-1530-5811
Sebastian HinzDepartment of Visceral and Thoracic Surgery, University Hospital Schleswig Holstein, Kiel, Germany.
Greta BurmeisterDepartment of Visceral and Thoracic Surgery, University Hospital Schleswig Holstein, Kiel, Germany.
Witigo von ShönfelsDepartment of Visceral and Thoracic Surgery, University Hospital Schleswig Holstein, Kiel, Germany.
Clemens SchafmayerDepartment of Visceral and Thoracic Surgery, University Hospital Schleswig Holstein, Kiel, Germany.
Peter AhnertInstitute for Medical Informatics, Statistics, and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany.ORCID http://orcid.org/0000-0002-1771-0856
Henry VölzkeInstitute for Community Medicine, University Medicine Greifswald, Greifswald, Germany.
Uwe VölkerInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.ORCID http://orcid.org/0000-0002-5689-3448
Georg HomuthInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Markus M LerchInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Klaus PuschelDepartment of Familiar Medicine, Faculty of Medicine, Pontificia Universidad Católica de Chile, Santiago, Chile.
Rodrigo A GutiérrezInstitute for Integrative Biology, FONDAP Center for Genome Regulation, Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.ORCID http://orcid.org/0000-0002-5961-5005
Jochen HampeDepartment of Medicine I, University Hospital Dresden, Technische Universität Dresden, TU Dresden, Dresden, Germany.ORCID http://orcid.org/0000-0002-2421-6127
Peter NürnbergCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Juan Francisco MiquelDepartamento de Gastroenterología, Facultad de Medicina, Pontificia Universidad Católica de Chile, Santiago, Chile.
Giancarlo V De FerrariInstitute of Biomedical Sciences, Faculty of Medicine and Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile. gdeferrari@unab.cl.ORCID http://orcid.org/0000-0003-0932-125X
Pontificia Universidad Católica de Chile · CLUniversitätsmedizin Greifswald · DEUniversity Hospital Schleswig-Holstein · DEChristian-Albrechts-Universität zu Kiel · DETechnische Universität Dresden · DEUniversidad Andrés Bello · CLUniversity of Cologne · DEBroad Institute · USCleveland Clinic · USLeipzig University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gallstones Disease (GSD) is one of the most common digestive diseases requiring hospitalization and surgical procedures in the world. GSD has a high prevalence in populations with European or Amerindian ancestry (10-20%) and the influence of genetic factors is broadly acknowledged. However, known genetic variants do not entirely explain the disease heritability suggesting that additional genetic variants remain to be identified. Here, we examined the association of copy number variants (CNVs) with GSD in a sample of 4778 individuals (1929 GSD cases and 2849 controls) including two European cohorts from Germany (n = 3702) and one admixed Latin American cohort from Chile (n = 1076). We detected 2936 large and rare CNVs events (size > 100 kb, frequency < 1%). Case-control burden analysis and generalized linear regression models revealed significant association of CNVs with GSD in men, with the strongest effect observed with CNVs overlapping lipid metabolism genes (p-value = 6.54 × 10

Indexed as

DNA Copy Number VariationsLipid MetabolismAdultAgedFemaleGallstonesHumansMaleMiddle AgedSex Factors

Identifiers

PMID31485028
PMCPMC6974590
OpenAlexW2971441804

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.