Evidence map›Paper›PMID 31484295›Full record

ArticleViruses2019

Evolutionary Dynamics of the Lineage 2 West Nile Virus That Caused the Largest European Epidemic: Italy 2011-2018.

Carla Veo, Carla Della Ventura, Ana Moreno, Francesca Rovida, Elena Percivalle, Sabrina Canziani, Debora Torri, Mattia Calzolari, Fausto Baldanti, Massimo Galli and 1 more

Abstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Increased incidence of human West Nile and Usutu infections in Austria, 2024: analysis of data from 2009 to 2024.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. One Health surveillance of West Nile and Usutu viruses: a repeated cross-sectional study exploring seroprevalence and endemicity in Southern France, 2016 to 2020.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Epidemiology of human West Nile virus infections in the European Union and European Union enlargement countries, 2010 to 2018.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Carla VeoDepartment of Biomedical and Clinical Sciences "L.Sacco", University of Milan, 20157 Milano, Italy.ORCID 0000-0002-2724-5871
Carla Della VenturaDepartment of Biomedical and Clinical Sciences "L.Sacco", University of Milan, 20157 Milano, Italy.
Ana MorenoExperimental Zooprophylactic Institute of Lombardy and Emilia-Romagna (IZSLER), 25124 Brescia, Italy.ORCID 0000-0002-8497-9708
Francesca RovidaMolecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, 27100 Pavia, Italy.
Elena PercivalleMolecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, 27100 Pavia, Italy.
Sabrina CanzianiExperimental Zooprophylactic Institute of Lombardy and Emilia-Romagna (IZSLER), 25124 Brescia, Italy.
Debora TorriExperimental Zooprophylactic Institute of Lombardy and Emilia-Romagna (IZSLER), 25124 Brescia, Italy.
Mattia CalzolariExperimental Zooprophylactic Institute of Lombardy and Emilia-Romagna (IZSLER), 25124 Brescia, Italy.ORCID 0000-0001-7489-2556
Fausto BaldantiMolecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, 27100 Pavia, Italy.
Massimo GalliDepartment of Biomedical and Clinical Sciences "L.Sacco", University of Milan, 20157 Milano, Italy.
Gianguglielmo ZehenderDepartment of Biomedical and Clinical Sciences "L.Sacco", University of Milan, 20157 Milano, Italy. gianguglielmo.zehender@unimi.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lineage 2 West Nile virus (WNV) caused a vast epidemic in Europe in 2018, with the highest incidence being recorded in Italy. To reconstruct the evolutionary dynamics and epidemiological history of the virus in Italy, 53 envelope gene and 26 complete genome sequences obtained from human and animal samples were characterised by means of next-generation sequencing. Phylogenetic analysis revealed two Italian strains originating between 2010 and 2012: clade A, which apparently became extinct in 2013-2014, and clade B, which was responsible for the 2018 epidemic. The mean genetic distances in clade B increased over time and with the distance between sampling locations. Bayesian birth-death and coalescent skyline plots of the clade B showed that the effective number of infections and the effective reproduction number (Re) increased between 2015 and 2018. Our data suggest that WNV-2 entered Italy in 2011 as a result of one or a few penetration events. Clade B differentiated mainly as a result of genetic drift and purifying selection, leading to the appearance of multiple locally circulating sub-clades for different times. Phylodynamic analysis showed a current expansion of the infection among reservoir birds and/or vectors.

Indexed as

Evolution, MolecularAnimalsEpidemicsEuropeGenetic VariationGenome, ViralHumansItalyPhylogenyPhylogeographyRNA, ViralWest Nile FeverWest Nile virusRNA, Viralevolutionary dynamicslineage 2 West Nile virusover-wintering reservoirs/vectorsphylodynamics

Identifiers

PMID31484295
PMCPMC6784286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.