Evidence map›Paper›PMID 31483100›Full record

ArticleCurrent protocols in chemical biology2019

Activity-Based Kinome Profiling Using Chemical Proteomics and ATP Acyl Phosphates.

Caroline E Franks, Ku-Lung Hsu

Open access · greenAbstract read
In one paragraph

Article in Current protocols in chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Small-molecule IKKβ activation modulator (IKAM) targets MAP3K1 and inhibits pancreatic tumor growth.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Caroline E FranksDepartment of Chemistry, University of Virginia, Charlottesville, Virginia.
Ku-Lung HsuDepartment of Chemistry, University of Virginia, Charlottesville, Virginia.
University of Virginia · US

Funding

TRAINING IN THE PHARMACOLOGICAL SCIENCEST32GM007055 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI LYNCH, KEVIN R. · 1985 to 2022
$7.2M
Endocannabinoid Biosynthesis in Inflammation and PainR01DA043571 · NIDA · UNIVERSITY OF VIRGINIA · PI Ku-Lung Hsu · 2017 to 2026
$3.5M
Functional Characterization of Diacylglycerol Lipases in Mammalian PhysiologyR00DA035864 · NIDA · UNIVERSITY OF VIRGINIA · PI HSU, KU-LUNG · 2015 to 2017
$744k
Functional Characterization of Diacylglycerol Lipases in Mammalian PhysiologyK99DA035864 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI HSU, KU-LUNG · 2014 to 2014
$128k
NIDA NIH HHS K99 DA035864NIDA NIH HHS R00 DA035864NIDA NIH HHS R01 DA043571NIGMS NIH HHS T32 GM007055
6 · The paper itself

Abstract

Human kinases are a large family of proteins (500+) that catalyze ATP-dependent phosphorylation of protein and metabolite substrates to regulate diverse facets of cell biology. Dysregulation and mutations of protein kinases are linked to human disease, providing opportunities for developing pharmacological agents as potential therapy. Assessing the selectivity of pharmacological compounds targeting this enzyme class is critical given that off-target activity of kinase inhibitor drugs may result in toxicity. This set of protocols outlines use of ATP acyl phosphate activity-based probes to evaluate the potency and selectivity of kinase inhibitors via fluorescent gel- and mass spectrometry-based detection methods. These competitive chemical proteomic assays can evaluate engagement of >200 native kinase targets directly in complex proteomes. © 2019 by John Wiley & Sons, Inc.

Indexed as

Chromatography, High Pressure LiquidDiacylglycerol KinaseElectrophoresis, Polyacrylamide GelHEK293 CellsHumansIsotope LabelingMolecular ProbesPhosphotransferasesProteomeProteomicsRecombinant ProteinsTandem Mass SpectrometryDiacylglycerol KinaseMolecular ProbesPhosphotransferasesProteomeRecombinant Proteinsactivity-based protein profilingchemical proteomicschemoproteomicskinaseKiNativkinomemass spectrometry

Identifiers

PMID31483100
PMCPMC8632518
OpenAlexW2969382472

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.