Evidence map›Paper›PMID 31482094›Full record

ArticleFrontiers in molecular biosciences2019

Visualizing Proteasome Activity and Intracellular Localization Using Fluorescent Proteins and Activity-Based Probes.

Sabine Schipper-Krom, Alicia Sanz Sanz, Emma J van Bodegraven, Dave Speijer, Bogdan I Florea, Huib Ovaa, Eric A Reits

Abstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
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  10. Enzymatic bypass of an NThe Journal of biological chemistry
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sabine Schipper-KromDepartment of Medical Biology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Alicia Sanz SanzDepartment of Medical Biology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Emma J van BodegravenDepartment of Medical Biology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Dave SpeijerDepartment of Medical Biochemistry, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Bogdan I FloreaLeiden Institute of Chemistry, Leiden University, Leiden, Netherlands.
Huib OvaaDepartment of Cell and Chemical Biology, Leiden University Medical Center, Oncode Institute, Leiden, Netherlands.
Eric A ReitsDepartment of Medical Biology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The proteasome is a multi-catalytic molecular machine that plays a key role in the degradation of many cytoplasmic and nuclear proteins. The proteasome is essential and proteasome malfunction is associated with various disease pathologies. Proteasome activity depends on its catalytic subunits which are interchangeable and also on the interaction with the associated regulatory cap complexes. Here, we describe and compare various methods that allow the study of proteasome function in living cells. Methods include the use of fluorescently tagged proteasome subunits and the use of activity-based proteasome probes. These probes can be used in both biochemical assays and in microscopy-based experiments. Together with tagged proteasomes, they can be used to study proteasome localization, dynamics, and activity.

Indexed as

activity probesdynamicsfluorescenceliving cellsproteasome

Identifiers

PMID31482094
PMCPMC6710370

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.