ArticleFrontiers in plant science2019
Plastid Genomes of Five Species of Riverweeds (Podostemaceae): Structural Organization and Comparative Analysis in Malpighiales.
Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.
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39 citing papers in PubMed.
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- Plastome evolution at the edge: structural rearrangements, IR expansion, and gene flux in Hypericaceae (Malpighiales).BMC plant biology · 2025Article
- De novo assembled nuclear, chloroplast, and mitochondrial genomes show high intraspecific variation in the tropical rainforest species Symphonia globulifera.G3 (Bethesda, Md.) · 2025Article
- Species-specific marker development for accurate identification of three red algae (Marine life science & technology · 2025Article
- Plastid phylogenomics of the parietal clade of Malpighiales: ancestral genome synteny and congruent signal across exons, introns and spacers in support of Salicaceae relationships.Annals of botany · 2025Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Chloroplast genomes of Simarouba Aubl., molecular evolution and comparative analyses within Sapindales.Scientific reports · 2024Article
- Comparative mitochondrial genomics of Terniopsis yongtaiensis in Malpighiales: structural, sequential, and phylogenetic perspectives.BMC genomics · 2024Article
- Characterization, comparison, and phylogenetic analyses of chloroplast genomes of Euphorbia species.Scientific reports · 2024Article
- Molecular analyses display the increasing diversity of Podostemaceae in China.Plant diversity · 2024Article
- Evolution of the Araliaceae family involved rapid diversification of the Asian Palmate group and Hydrocotyle specific mutational pressure.Scientific reports · 2023Article
- The dynamic history of plastome structure across aquatic subclass Alismatidae.BMC plant biology · 2023Article
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- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2023Article
- Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species.BMC genomics · 2022Article
- The extremely reduced, diverged and reconfigured plastomes of the largest mycoheterotrophic orchid lineage.BMC plant biology · 2022Article
- Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae).BMC plant biology · 2022Article
- Plastome phylogenomics and historical biogeography of aquatic plant genus Hydrocharis (Hydrocharitaceae).BMC plant biology · 2022Article
- An integrated study of Violae Herba (Viola philippica) and five adulterants by morphology, chemical compositions and chloroplast genomes: insights into its certified plant origin.Chinese medicine · 2022Article
Corrections and comments
- Erratum issued
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the advent of next-generation sequencing technologies, whole-plastome data can be obtained as a byproduct of low-coverage sequencing of the plant genomic DNA. This provides an opportunity to study plastid evolution across groups, as well as testing phylogenetic relationships among taxa. Within the order Malpighiales (∼16,000 spp.), the Podostemaceae (∼300 spp.) stand out for their unique habit, living attached to rocks in fast-flowing aquatic habitats, and displaying highly modified morphologies that confound our understanding of their classification, biology, and evolution. In this study, we used genome skimming data to assemble the full plastid genome of 5 species within Podostemaceae. We analyzed our data in a comparative framework within Malpighiales to determine the structure, gene content, and rearrangements in the plastomes of the family. The Podostemaceae have one of the smallest plastid genomes reported so far for the Malpighiales, possibly due to variation in length of inverted repeat (IR) regions, gene loss, and intergenic region variation. We also detected a major inversion in the large single-copy region unique to the family. The uncommon loss or pseudogenization of
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