Evidence map›Paper›PMID 31481722›Full record

ArticleScientific reports2019

Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.

Juliana Afonso, Luiz Lehmann Coutinho, Polyana Cristine Tizioto, Wellison Jarles da Silva Diniz, Andressa Oliveira de Lima, Marina Ibelli Pereira Rocha, Carlos Eduardo Buss, Bruno Gabriel Nascimento Andrade, Otávio Piaya, Juliana Virginio da Silva and 6 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Juliana AfonsoDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.ORCID http://orcid.org/0000-0002-4435-5386
Luiz Lehmann CoutinhoDepartment of Animal Science, University of São Paulo/ESALQ, Piracicaba, Brazil.ORCID http://orcid.org/0000-0002-7266-8881
Polyana Cristine TiziotoNGS Soluções Genômicas, Rua Ajudante Albano 847, Piracicaba, SP, Brazil.
Wellison Jarles da Silva DinizDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.ORCID http://orcid.org/0000-0003-1082-5535
Andressa Oliveira de LimaDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.
Marina Ibelli Pereira RochaDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.
Carlos Eduardo BussDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.
Bruno Gabriel Nascimento AndradeEmbrapa Pecuária Sudeste, São Carlos, Brazil.
Otávio PiayaDepartment of Evolutionary Genetics and Molecular Biology, Federal University of São Carlos, São Carlos, Brazil.
Juliana Virginio da SilvaPhysics Institute of São Carlos, University of São Paulo, São Carlos, Brazil.
Laura Albuquerque LinsAnimal Science department, Laboratory of Molecular Genetics. São Paulo State University, Jaboticabal, Brazil.
Caio Fernando GromboniBahia Federal Institute of Education, Science and Technology, Ilhéus, Brazil.
Ana Rita Araújo NogueiraEmbrapa Pecuária Sudeste, São Carlos, Brazil.
Marina Rufino Salinas FortesSchool of Chemistry and Molecular Biosciences, Faculty of Sciences, The University of Queensland, Brisbane, Australia.
Gerson Barreto MouraoDepartment of Animal Science, University of São Paulo/ESALQ, Piracicaba, Brazil.
Luciana Correia de Almeida RegitanoEmbrapa Pecuária Sudeste, São Carlos, Brazil. luciana.regitano@embrapa.br.ORCID http://orcid.org/0000-0001-9242-8351

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mineral content affects the biological processes underlying beef quality. Muscle mineral concentration depends not only on intake-outtake balance and muscle type, but also on age, environment, breed, and genetic factors. To unveil the genetic factors involved in muscle mineral concentration, we applied a pairwise differential gene expression analysis in groups of Nelore steers genetically divergent for nine different mineral concentrations. Here, based on significant expression differences between contrasting groups, we presented candidate genes for the genetic regulation of mineral concentration in muscle. Functional enrichment and protein-protein interaction network analyses were carried out to search for gene regulatory processes concerning each mineral. The core genetic regulation for all minerals studied, except Zn, seems to rest on interactions between components of the extracellular matrix. Regulation of adipogenesis-related pathways was also significant in our results. Antagonistic patterns of gene expression for fatty acid metabolism-related genes may explain the Cu and Zn antagonistic effect on fatty acid accumulation. Our results shed light on the role of these minerals on cell function.

Indexed as

Gene Expression ProfilingAnimalsCattleGene Expression RegulationGene Regulatory NetworksMetabolic Networks and PathwaysMineralsMuscle, SkeletalMinerals

Identifiers

PMID31481722
PMCPMC6722098

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.